Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cynoglossus_20semilaevis_20[refseq_20GCF_5F000523025.1_202014-01-28] 29,643 sequences; 470,199,494 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq4 197 2e-45 >seq4 Length=20010643 Score = 197 bits (218), Expect = 2e-45 Identities = 960/1498 (64%), Gaps = 48/1498 (3%) Strand=Plus/Minus Query 75212 CCACAGTACATGTTCATGCGGGTCGCAATCGGCATCCACGGGGAAGACATTGATTCTGTC 75271 || ||| ||||| |||||||||| | | || |||||| | | || || || | | | Sbjct 16961296 CCCCAGCACATGCTCATGCGGGTGTCTGTTGGTATCCACAAGAATGATATCGACGCCGCC 16961237 Query 75272 TTGGAGACATACGACAAGATGTCCCA-AGGTATGTTCATTCACGCAACACCAACCCTCTT 75330 | | || ||| || | |||| | | || ||||| ||||| |||| || ||||| Sbjct 16961236 ATCAATACCTACAACCTGCTGTCAGAGAAGTG-GTTCACCCACGCGTCACCCACGCTCTT 16961178 Query 75331 CAATGCTGGTACACCAA--GACCGCAGATGTCCAGTTGCTTCCTTATCGCCAACAAGGAG 75388 ||| || || || ||| | || ||| ||||||| |||||||| | |||| ||||| Sbjct 16961177 CAACGCAGGAAC--CAACCGGCCCCAGCTGTCCAGCTGCTTCCTGCTGGCCATGAAGGAC 16961120 Query 75389 GACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCT 75448 ||| ||| | || ||||||| || || | | | || || | ||||| |||| ||| Sbjct 16961119 GACAGCATCGAAGGCATCTATGACACGCTGAAGAACTGCGCCCTCATCTCCAAGTCGGCC 16961060 Query 75449 GGGGGTATTGGGATGCACATCCATGATG--TGAGAGCCAATAA-ATCTCGTATTCGGGGG 75505 || || || || || | | | || | ||| ||| | | || || ||| Sbjct 16961059 GGCGGCATCGGTGTGGCCGTTA--GCTGCATCAGATCCACTGGGAGCTAC-ATCGCTGGG 16961003 Query 75506 ACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGC 75565 || || || | ||| | || | | || ||||| | || | |||| |||||||||| Sbjct 16961002 ACCAACGGAAACTCAAACGGCCTGGTGCCCATGCTGAGAGTGTATAACAACACAGCGCGC 16960943 Query 75566 TATGTAAATCAAGCGGG------GCGTCGCAAGGGGTCCATCGCGGTCTACTTGGAACCA 75619 || || |||| | || ||||| || || | || | |||||||| || Sbjct 16960942 TACGTGGATCAGGGTGGCAACAAGCGTCCT---GGAGCCTTTGCCATTTACTTGGAGCCC 16960886 Query 75620 TGGCATGCCGATATCATGGAGTTCCTTGAG-TTACGACTCAACCAAGGTGACGAAGAGGC 75678 |||||| || || | || ||||| || ||| || ||| ||| | || ||| Sbjct 16960885 TGGCATTATGACGTCTTTGACTTCCTGGATCTTAAGAAG-AACACAGGGAAGGAGGAGCA 16960827 Query 75679 TCGGTGTAGAGATCTCTTTTCATCCCTGTGGATTCCAGACCTTTTCATGAAGCGGGTTGA 75738 | |||||||||| | || ||||||| || ||||| ||||||||| |||| || Sbjct 16960826 GAGAGCGCGAGATCTCTTCTACGCCATGTGGATCCCTGACCTGTTCATGAAGAGGGTGGA 16960767 Query 75739 --GGAGGGTGGTCAATGGTCTCTTTTCTGTCCAGACAAGGCACCAGGTCTCTCCGAC-GC 75795 | | || | ||||| || | ||||| || || ||||| ||| || Sbjct 16960766 AAGCAACCAGGAC--TGGTCACTCATGTGTCCCAGTGAGTGTCCCGGTCTGGACGAGTGC 16960709 Query 75796 GGTGGGTGAGGAGTTTGAAGCCCTCTACACAAAGTATGAAGAGGAGGGTAGAGCCAATGC 75855 | ||| ||| |||| || | |||||||| | |||||| |||| || || | || || Sbjct 16960708 TGGGGG-GAGAAGTTCGAGGAGCTCTACACTAGGTATGAGAAGGAAGGGAGGGTGAA-GC 16960651 Query 75856 GACTGTACCAGCCGCCGATGTT-TGGAAGGCTATTCTCAAATCACAGACGGAGACTGGAA 75914 | || || | | | | ||| | || || | | || ||||| || || || | Sbjct 16960650 GCGTGGTGAAGGCTCAACAGCTGTGGCACGCCATAATTGAGTCGCAGACAGAAACCGGTA 16960591 Query 75915 CACCATATATGCTTTACAAGGATGCTTGTAACAAGAAGAGTAACCAAAAGAATTTGGGAA 75974 | || || ||||| ||||| || || || |||| |||||| ||||| |||| |||| | Sbjct 16960590 CGCCCTACATGCTCTACAAAGACGCCTGCAACAGGAAGAGCAACCAGCAGAACCTGGGCA 16960531 Query 75975 CAATCAAGAGCTCAAATCTTTGCACGGAAATTTTAGAGTACACAGATAAGGATGAGACGG 76034 | |||||| || || || ||||| ||||| | |||||||| | || ||| || Sbjct 16960530 CCATCAAGTGCAGCAACCTGTGCACAGAAATCGTGGAGTACACCAGCACAGACGAGGTGG 16960471 Query 76035 CTGTTTGCAATTTGGCATCAATCGCCCTTCCAAAGTATGTCAATGAAGAGACTCGCACTT 76094 | ||||| ||| |||| || ||||| || | ||| |||| |||| || |||| Sbjct 16960470 CCGTTTGTAATCTGGCGTCCATCGCTCTCAACATGTACGTCACCCCAGAG---CGGACTT 16960414 Query 76095 TTGATTATGAAAAACTTCATGAAATCACAAAGATTGTTACCAAAAATCTAAACCGAGTCA 76154 ||| | | ||||| | | || ||| | | || |||||| ||| ||| Sbjct 16960413 ATGACTTCAACAAACTGACACAGGTGACCAAGGTGATCGTCAGAAATCTGAACAAGATCA 16960354 Query 76155 TTGACAGAAATTTTTATCCCGTT---GAGACTGCGCGAAAGTCTAATATGCGACACAGAC 76211 | |||| || | ||||| || ||| ||| ||| || || | ||| ||||| | Sbjct 16960353 TAGACATCAACTACTATCCTGTGCCCGAGGCTGA---AAACTCCAACAAGCGCCACAGGC 16960297 Query 76212 CTATTGGTTTGGGTGTTCAAGGTCTCGCGGATGTATTTATTTTGTGCCGCTACGCATTTG 76271 | || || | ||||| || ||||| || || | || || || || | | | |||| Sbjct 16960296 CAATAGGAATTGGTGTCCAGGGTCTGGCAGACGCCTTCATCCTGATGCGTTTCCCTTTTG 16960237 Query 76272 ATTCAGATGAAGCCAAGGAGATGAATGCTCGTATCTTTGAAACCATGTATCACGCATCCC 76331 | |||||| || | | || | ||||| || ||||| || |||| ||| Sbjct 16960236 AAAGCCCTGAAGCTCAGCTGCTCAACATCCAAATCTTCGAGACCATCTACTACGCCGCCC 16960177 Query 76332 TGGAGGCGAGTTGTGAATTGGCTGAAGCCCAAGGTTCCTATGAGACATTTGAGGGTTCTC 76391 | ||||| || || || |||||| || || |||||||||| | || || |||| Sbjct 16960176 TAGAGGCCAGCTGCGAGCTGGCTGCAGAGTTGGGCCCCTATGAGACGTACGAAGGGTCTC 16960117 Query 76392 CCGCGTCC-CAAGGGG-TGCTTCAGTTTGATATGTGGGAAGGTGAAACCAAGCTCAACTA 76449 | | || |||||| | ||||||| || |||||||| | || || | | | || Sbjct 16960116 CAG--TCAGCAAGGGCATCCTTCAGTACGACATGTGGGA-GAAGACGCCCA-CAGACCTG 16960061 Query 76450 CG--ACTGGGATGTTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTTTTG 76507 | |||||| | || ||||| ||| | | || | | |||||||| || Sbjct 16960060 TGGGACTGGGCCCTGCTGAAGGAGAAGATCTCCAAACATGGAGTCAGGAACAGTCTGCTG 16960001 Query 76508 ATGGCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAA 76567 ||||| || ||||| |||||||||||||| || ||| |||| || || || | | | || Sbjct 16960000 ATGGCCCCCATGCCCACAGCCTCCACCGCCCAGATCCTGGGCAACAACGAGTCCATCGAG 16959941 Query 76568 CCATACACAACAAACATCTACCTGAGAAGAACCCTCGCAGGTGAGTTTGTCATTGTCAAC 76627 || ||||| | ||||||||| | ||| || | || ||||| || || ||| Sbjct 16959940 CCCTACACCAGCAACATCTACACCCGCAGAGTTCTGTCTGGAGAGTTCCAGATCGTGAAC 16959881 Query 76628 AAGCACCTCGTCAATGACCTCAAGAAGATTGGTCTCTGGTCCAAGGATATGAAGGATC 76685 || || |||| ||||| | | ||| || || ||| | |||| |||||| ||| Sbjct 16959880 CCTCATCTGCTCAAAGACCTGACGGAGAGAGGACTGTGGAGCGAGGAAATGAAGAATC 16959823 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596348548591840