Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cynoglossus_20semilaevis_20[refseq_20GCF_5F000523025.1_202014-01-28] 29,643 sequences; 470,199,494 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq4 159 4e-33 seq7 140 4e-27 seq5 138 1e-26 seq581 116 5e-20 seq1 116 5e-20 seq19 98.7 1e-14 seq8 98.7 1e-14 >seq4 Length=20010643 Score = 159 bits (176), Expect = 4e-33 Identities = 205/282 (73%), Gaps = 8/282 (3%) Strand=Plus/Plus Query 1630065 CTGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGA 1630124 ||| || ||||||||||| |||| |||| | || | ||||||||||| |||||||| || Sbjct 16960931 CTGATCCACGTAGCGCGCTGTGTTGTTATACACTCTCAGCATGGGCACCAGGCCGTTTGA 16960990 Query 1630125 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGC----GCACCTTGTGCGCGGCAA 1630180 | |||||||| || || | |||| || | || | ||| || |||| | Sbjct 16960991 GTTTCCGTTGGTCCCAGCGATGTAGCTCCCAGTGGATCTGATGCAGCTAA----CGGCCA 16961046 Query 1630181 AGCCGATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGC 1630240 ||||||||||||||||||||||||||||| ||||| | || |||||||| ||||||| Sbjct 16961047 CACCGATGCCGCCGGCCGACTTGGAGATGAGGGCGCAGTTCTTCAGCGTGTCATAGATGC 16961106 Query 1630241 CCTCGATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCG 1630300 | ||||| |||| |||||||| ||| || ||||| || || || | | Sbjct 16961107 CTTCGATGCTGTCGTCCTTCATGGCCAGCAGGAAGCAGCTGGACAGCTGGGGCCGGTTGG 16961166 Query 1630301 TGCCGGCGTTGAAGAGCGTGGGCGTCGCCGCGGTGAACAACT 1630342 | || ||||||||||||||||| | ||| ||||||| ||| Sbjct 16961167 TTCCTGCGTTGAAGAGCGTGGGTGACGCGTGGGTGAACCACT 16961208 Score = 91.5 bits (100), Expect = 2e-12 Identities = 95/125 (76%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 1628167 ACGATCTCGGTGCACAGGTTGGCCGACGTCGTCGTACCCAGGTTCTGCTGGTTGGTGGTC 1628226 ||||| || |||||||||||| || | | || |||||||||||||||||| | || Sbjct 16960497 ACGATTTCTGTGCACAGGTTGCTGCACTTGATGGTGCCCAGGTTCTGCTGGTTGCTCTTC 16960556 Query 1628227 AGGTTGACGGCGTCCTTGTGGAGCATGTAGGGCGCGCCGGTCTCGATCTGCGCCGCGACG 1628286 |||| |||||| |||| |||||||||||||| ||||| || |||||| | | | Sbjct 16960557 CTGTTGCAGGCGTCTTTGTAGAGCATGTAGGGCGTACCGGTTTCTGTCTGCGACTCAATT 16960616 Query 1628287 ATGGC 1628291 ||||| Sbjct 16960617 ATGGC 16960621 >seq7 Length=13814722 Score = 140 bits (154), Expect = 4e-27 Identities = 152/202 (75%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || ||| ||| | |||||| || |||||||||||||| | | | || Sbjct 10492722 GCTTGGCCAGCTCACCGGGCAGCAGCAGGCGGACAGCGGTCTGGATCTCCCTGGAGGTGA 10492663 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| ||||||||| | || ||||| ||| ||||||| | ||||||| |||| | Sbjct 10492662 TGGTGGAGCGCTTGTTGTAATGGGCCAGGCGGGAAGCCTCGGAGGCGATGCGCTCGAAGA 10492603 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 ||||||| || ||||| ||||||| ||| | |||| |||||| || ||| |||| Sbjct 10492602 TGTCGTTCACGAACGAATTCATGATGCTCATGGCCTTGGAGGAGATACCGGTGTCAGGGT 10492543 Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544 | |||||||| || |||||||| Sbjct 10492542 GGACCTGCTTCAGGACCTTGTA 10492521 Score = 134 bits (148), Expect = 2e-25 Identities = 152/204 (75%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || ||| ||| | |||||| || |||||||||||||| | | | || Sbjct 10488336 GCTTGGCCAGCTCACCGGGCAGCAGCAGGCGGACAGCGGTCTGGATCTCCCTGGAGGTGA 10488277 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| ||||||||| | || ||||| ||| ||||||| | ||||||| |||| | Sbjct 10488276 TGGTGGAGCGCTTGTTGTAATGGGCCAGGCGGGAAGCCTCGGAGGCGATGCGCTCGAAGA 10488217 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||| | || || || ||||||| ||| | |||| |||||| || |||||||| Sbjct 10488216 TGTCACTTACGAATGAATTCATGATGCTCATAGCCTTGGAGGAGATACCGGTGTCGGGGT 10488157 Query 1254523 GCACCTGCTTGAGCACCTTGTAGA 1254546 | |||||||| || |||||||||| Sbjct 10488156 GGACCTGCTTCAGGACCTTGTAGA 10488133 >seq5 Length=19279693 Score = 138 bits (152), Expect = 1e-26 Identities = 150/199 (75%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 1254346 TGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGATCG 1254405 ||||||| || ||| ||| | ||| || || |||||||||||||| | | | ||| | Sbjct 15390706 TGGCCAGCTCACCGGGCAGCAGCAGACGAACAGCGGTCTGGATCTCCCTGGAGGTGATGG 15390647 Query 1254406 TGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCATGT 1254465 || ||| ||||| | || ||||| ||| ||||| | | ||||||| |||| || || Sbjct 15390646 TGGAGCGTTTGTTGTAATGGGCCAGGCGGGAAGCCTCAGAGGCGATGCGTTCGAACACGT 15390587 Query 1254466 CGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGTGCA 1254525 ||||||| ||||||||||||| ||| | |||| |||||| || ||||||||| | Sbjct 15390586 CGTTGACGAACGAGTTCATGATGCTCATGGCCTTGGAGGAGATCCCGGTGTCGGGGTGGA 15390527 Query 1254526 CCTGCTTGAGCACCTTGTA 1254544 ||||||| || |||||||| Sbjct 15390526 CCTGCTTCAGGACCTTGTA 15390508 Score = 123 bits (136), Expect = 3e-22 Identities = 145/196 (74%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || ||| ||| | ||| || || |||||||||||||| | | || Sbjct 15399671 GCTTGGCCAGCTCACCGGGCAGCAGCAGACGAACAGCGGTCTGGATCTCCCTGGATGTGA 15399612 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| ||||||||| | || ||||| ||| ||||| | | ||||||| |||| || Sbjct 15399611 TGGTGGAGCGCTTGTTGTAATGGGCCAGGCGGGAAGCCTCAGAGGCGATGCGTTCGAACA 15399552 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 ||||||||| ||||||||||||| ||| | |||| |||||| || ||| |||| Sbjct 15399551 CGTCGTTGACGAACGAGTTCATGATGCTCATGGCCTTGGAGGAGATCCCGGTGTCAGGGT 15399492 Query 1254523 GCACCTGCTTGAGCAC 1254538 | |||||||| || || Sbjct 15399491 GGACCTGCTTCAGGAC 15399476 >seq581 Length=1525 Score = 116 bits (128), Expect = 5e-20 Identities = 144/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 1254348 GCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGATCGTG 1254407 ||||| || ||| | | | ||| || ||||||||||||||||| | | ||| ||| Sbjct 1178 GCCAGCTCTCCGGGGAGCAGCAGACGAACGGCGGTCTGGATCTCCCTGGAAGTGATGGTG 1119 Query 1254408 TTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCG 1254467 ||||||||| |||| ||||||||| ||||| | ||||||| || | |||||| Sbjct 1118 GAGCGCTTGTTGTAGTGAGCCAGACGGGAAGCCTCAGAAGCGATGCGTTCAAAGATGTCG 1059 Query 1254468 TTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGTGCACC 1254527 ||||| ||||||||||||| ||| | ||| ||| || || ||| || || ||| Sbjct 1058 TTGACGAACGAGTTCATGATTCCCATGGCTTTGGAGGAAATACCGGTGTCAGGATGGACC 999 Query 1254528 TGCTTGAGCACCTTGTA 1254544 ||||| | ||||||||| Sbjct 998 TGCTTCATCACCTTGTA 982 >seq1 Length=34528841 Score = 116 bits (128), Expect = 5e-20 Identities = 144/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 1254348 GCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGATCGTG 1254407 ||||| || ||| | | | ||| || ||||||||||||||||| | | ||| ||| Sbjct 33960411 GCCAGCTCTCCGGGGAGCAGCAGACGAACGGCGGTCTGGATCTCCCTGGAAGTGATGGTG 33960352 Query 1254408 TTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCG 1254467 ||||||||| |||| ||||||||| ||||| | ||||||| || | |||||| Sbjct 33960351 GAGCGCTTGTTGTAGTGAGCCAGACGGGAAGCCTCAGAAGCGATGCGTTCAAAGATGTCG 33960292 Query 1254468 TTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGTGCACC 1254527 ||||| ||||||||||||| ||| | ||| ||| || || ||| || || ||| Sbjct 33960291 TTGACGAACGAGTTCATGATTCCCATGGCTTTGGAGGAAATACCGGTGTCAGGATGGACC 33960232 Query 1254528 TGCTTGAGCACCTTGTA 1254544 ||||| | ||||||||| Sbjct 33960231 TGCTTCATCACCTTGTA 33960215 Score = 116 bits (128), Expect = 5e-20 Identities = 144/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 1254348 GCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGATCGTG 1254407 ||||| || ||| | | | ||| || ||||||||||||||||| | | ||| ||| Sbjct 33982557 GCCAGCTCTCCGGGGAGCAGCAGACGAACGGCGGTCTGGATCTCCCTGGAAGTGATGGTG 33982616 Query 1254408 TTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCG 1254467 ||||||||| |||| ||||||||| ||||| | ||||||| || | |||||| Sbjct 33982617 GAGCGCTTGTTGTAGTGAGCCAGACGGGAAGCCTCAGAAGCGATGCGTTCAAAGATGTCG 33982676 Query 1254468 TTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGTGCACC 1254527 ||||| ||||||||||||| ||| | ||| ||| || || ||| || || ||| Sbjct 33982677 TTGACGAACGAGTTCATGATTCCCATGGCTTTGGAGGAAATACCGGTGTCAGGATGGACC 33982736 Query 1254528 TGCTTGAGCACCTTGTA 1254544 ||||| | ||||||||| Sbjct 33982737 TGCTTCATCACCTTGTA 33982753 Score = 113 bits (124), Expect = 6e-19 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 1254348 GCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGATCGTG 1254407 ||||| || ||| | | | ||| || ||||||||||||||||| | | ||| ||| Sbjct 33961192 GCCAGCTCTCCGGGGAGCAGCAGACGAACGGCGGTCTGGATCTCCCTGGAAGTGATGGTG 33961133 Query 1254408 TTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCG 1254467 ||||||||| |||| ||||||||| ||||| | ||||||| || | |||||| Sbjct 33961132 GAGCGCTTGTTGTAGTGAGCCAGACGGGAAGCCTCAGAAGCGATGCGTTCAAAGATGTCG 33961073 Query 1254468 TTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGTGCACC 1254527 ||||| ||||||||||||| ||| | ||| ||| || || ||| || || ||| Sbjct 33961072 TTGACGAACGAGTTCATGATTCCCATGGCTTTGGAGGAAATACCGGTGTCAGGATGGACC 33961013 Query 1254528 TGCTTGAGCACCTTGTA 1254544 ||||| | |||||||| Sbjct 33961012 TGCTTCATGACCTTGTA 33960996 Score = 87.8 bits (96), Expect = 2e-11 Identities = 86/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 512050 CGTCATCTCCTTTGACGGCACCTACGTCAACGACCGCCACTTTGCGCTGGCCACCGACAC 512109 |||||| ||||||||||| ||||||||||| |||| ||||| || || | ||||| Sbjct 25615355 CGTCATATCCTTTGACGGTTCCTACGTCAACTACCGTCACTTGGCTTTGCTCTGTGACAC 25615296 Query 512110 CATGTGCTGCCGCGGATCGGTGGTGGCCGTCACGCGCCACGGCTTCAACCG 512160 ||| ||||||||| || ||||| ||||||| |||||| ||||||| Sbjct 25615295 AATGACCTGCCGCGGTCACCTGATGGCCATCACGCGTCACGGCATCAACCG 25615245 >seq19 Length=17744385 Score = 98.7 bits (108), Expect = 1e-14 Identities = 143/202 (71%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || |||||| || ||| ||| | ||| || || || ||||||||||| | | || Sbjct 16922119 GCTTGGCCAACTCCCCGGGCAGCAGCAGACGGACAGCCGTCTGGATCTCCCTGGAAGTGA 16922178 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| ||| ||||| | || ||||| ||| || || |||| || || | | Sbjct 16922179 TGGTGGAGCGTTTGTTGTACTGAGCCAGGCGGGAAGCTTCTCCAGCGATCCGCTCAAAGA 16922238 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 ||||| |||| || |||||||||| ||| | |||| ||||||||| |||||||| Sbjct 16922239 TGTCGCTGACGAAGGAGTTCATGATGCTCATGGCCTTGGAGGAGATGCCGGTGTCGGGGT 16922298 Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544 | |||||||| || |||||||| Sbjct 16922299 GGACCTGCTTCAGGACCTTGTA 16922320 Score = 98.7 bits (108), Expect = 1e-14 Identities = 143/202 (71%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || |||||| || ||| ||| | ||| || || || ||||||||||| | | || Sbjct 16933629 GCTTGGCCAACTCCCCGGGCAGCAGCAGACGGACAGCCGTCTGGATCTCCCTGGAAGTGA 16933570 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| ||| ||||| | || ||||| ||| || || |||| || || | | Sbjct 16933569 TGGTGGAGCGTTTGTTGTACTGAGCCAGGCGGGAAGCTTCTCCAGCGATCCGCTCAAAGA 16933510 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 ||||| |||| || |||||||||| ||| | |||| ||||||||| |||||||| Sbjct 16933509 TGTCGCTGACGAAGGAGTTCATGATGCTCATGGCCTTGGAGGAGATGCCGGTGTCGGGGT 16933450 Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544 | |||||||| || |||||||| Sbjct 16933449 GGACCTGCTTCAGGACCTTGTA 16933428 Score = 86.0 bits (94), Expect = 8e-11 Identities = 124/175 (71%), Gaps = 0/175 (0%) Strand=Plus/Minus Query 1628161 AACTGGACGATCTCGGTGCACAGGTTGGCCGACGTCGTCGTACCCAGGTTCTGCTGGTTG 1628220 |||| |||||||| ||||||||||| | | | || |||||||||||||||||| Sbjct 13834231 AACTCCACGATCTCTGTGCACAGGTTACTACATTTGATGGTTCCCAGGTTCTGCTGGTTG 13834172 Query 1628221 GTGGTCAGGTTGACGGCGTCCTTGTGGAGCATGTAGGGCGCGCCGGTCTCGATCTGCGCC 1628280 | || |||| ||||||||||| |||||||||||| | || || || |||| | | Sbjct 13834171 CTCTTCCTGTTGCAGGCGTCCTTGTAGAGCATGTAGGGAGTTCCTGTTTCTGTCTGTGAC 13834112 Query 1628281 GCGACGATGGCCGACCAGATCTGGCGCGCGGGCACGACAGTCCGCGCGCGGCCCT 1628335 | | || ||| ||| | ||| | || ||| ||| || ||| ||||||| Sbjct 13834111 TCAATGACGGCGTGCCACAGCTGCTGAGCCTTCACCACACGCCTCGCCCGGCCCT 13834057 >seq8 Length=30151083 Score = 98.7 bits (108), Expect = 1e-14 Identities = 141/199 (71%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 1254346 TGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGATCG 1254405 ||||||| || || ||| | ||| ||||| |||||||||||||| || | ||| | Sbjct 16823736 TGGCCAGCTCACCCGGCAGAAGCAGACGCACAGCGGTCTGGATCTCCCGTGACGTGATGG 16823677 Query 1254406 TGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCATGT 1254465 | |||||||| |||| |||| ||| ||||| | ||||||| || | |||| Sbjct 16823676 TAGAACGCTTGTTATAGTGAGCCAAGCGGGAAGCCTCAGATGCGATGCGTTCAAAGATGT 16823617 Query 1254466 CGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGTGCA 1254525 | ||||| || || ||||||| ||| | ||| |||||| || ||| ||||| | Sbjct 16823616 CATTGACGAAGGAATTCATGATGCTCATGGCCTTAGAGGAGATACCGGTGTCAGGGTGGA 16823557 Query 1254526 CCTGCTTGAGCACCTTGTA 1254544 |||| || || |||||||| Sbjct 16823556 CCTGTTTCAGGACCTTGTA 16823538 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6104706556601831