Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cynoglossus_20semilaevis_20[refseq_20GCF_5F000523025.1_202014-01-28] 29,643 sequences; 470,199,494 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq4 219 4e-52 seq19 111 1e-19 >seq4 Length=20010643 Score = 219 bits (242), Expect = 4e-52 Identities = 973/1524 (64%), Gaps = 35/1524 (2%) Strand=Plus/Plus Query 138479 TCAAGTCGTTTATCAGATATCTGTTTATGACCTGAAATTCACCGGCCAATACTCGACGAA 138538 ||| ||| || | ||||| ||| | || ||| || || || | || |||| || Sbjct 16959859 TCAGGTCTTTGAGCAGATGAGGGTTCACGATCTGGAACTCTCCAGACAGAACTCTGCGGG 16959918 Query 138539 CGTAAATGTTGTTGGTGAAAGGCTCAAACGATTCGTTGTTTCCCAGAATCTGAGCCGTGG 138598 ||| |||||| ||||| | ||||| | || |||||||| ||||| ||||| || |||| Sbjct 16959919 TGTAGATGTTGCTGGTGTAGGGCTCGATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGG 16959978 Query 138599 TCGCGGTCGGCATGTACGCCACCAAAAGAGAATTCCGTAAACCGTGAAGCTTGATTCGTT 138658 || || |||||| |||| || ||| |||| | || || ||| | Sbjct 16959979 AGGCTGTGGGCATGGGGGCCATCAGCAGACTGTTCCTGACTCCATGTTTGGAGATCTTCT 16960038 Query 138659 CCTTGAGCGACGACCAGTCCCACAAATCGCTAGGTTTTTTGTTCCACATATCGTACTGTA 138718 |||| ||| | ||||||||||| || | || | || | |||||| |||||||| | Sbjct 16960039 CCTTCAGCAGGGCCCAGTCCCACAGGTCTGTGGGCGTCTTCTCCCACATGTCGTACTGAA 16960098 Query 138719 ACATTCCCAAACTTGCGGGACTGCCTTCGTACGAATCGTATACACCAAACTCTTGCGCCA 138778 || ||| || | ||| |||||||||| || || || |||||| |||| Sbjct 16960099 GGATGCCCTTGCTGACTGGAGACCCTTCGTACGTCTCATAGGGGCCCAACTCTGCAGCCA 16960158 Query 138779 ACTCGTTGCTCGCCTCGAGCGCACCATAGTAAATAGTTTCGGCAATCTGCTGATTGAGCA 138838 |||| ||| ||||| || || | ||||| || || ||| || || ||||||| Sbjct 16960159 GCTCGCAGCTGGCCTCTAGGGCGGCGTAGTAGATGGTCTCGAAGATTTGGATGTTGAGCA 16960218 Query 138839 ATCGGGCCTCGGCGCTCTCGTACGGCATGCGGAGCATCGTGAACGCGTCGGCCAGCCCTT 138898 | || || | ||| || | || | || | || |||| ||||| ||||| || | Sbjct 16960219 GCTGAGCTTCAGGGCTTTCAAAAGGGAAACGCATCAGGATGAAGGCGTCTGCCAGACCCT 16960278 Query 138899 GCACGCCCACTCCGACAGGGCGATGGCGCAGATTTGACGCTTTTGCGGCTTCG---ATAG 138955 | || || | ||| | || | |||||| || || ||| | || ||| | || Sbjct 16960279 GGACACCAATTCCTATTGGCCTGTGGCGCTTGTTGGA---GTTTTCAGCCTCGGGCACAG 16960335 Query 138956 GATAATAGTTTACATCGATGATTTTGTTTAAATTTCGCACGACCACCTTAGTCGTATGCT 139015 |||| ||||| | || ||||| ||||| | ||||| |||| |||||| ||| || Sbjct 16960336 GATAGTAGTTGATGTCTATGATCTTGTTCAGATTTCTGACGATCACCTTGGTCACCTGTG 16960395 Query 139016 TTAATCGTTCAAAATCGTATGTGCCCCCGTTGTCGTCGACGACGTCGACAAATTTGTTGA 139075 | | | | || || || || ||| | | | | ||||| ||| |||||| Sbjct 16960396 TCAGTTTGTTGAAGTCATAAGT----CCGCTCTGG--GGTGACGT--ACA----TGTTGA 16960443 Query 139076 CACAAATCGAGGCTATGTTGCACACCGCCACTTCGTCGGGGTCGCTGTATTCGACAATTT 139135 | || || || | || || || ||||| ||||| | | | |||| || || |||| Sbjct 16960444 GAGCGATGGACGCCAGATTACAAACGGCCACCTCGTCTGTGCTGGTGTACTCCACGATTT 16960503 Query 139136 CGGCACACAAATTACTACACTTGATCGTACCTAAATTTTGTTGATTGCTTTTTCGGTTAC 139195 | | |||| || || |||||||| || || | || || || ||||| || | ||| | Sbjct 16960504 CTGTGCACAGGTTGCTGCACTTGATGGTGCCCAGGTTCTGCTGGTTGCTCTTCCTGTTGC 16960563 Query 139196 AAGCATCTTTGTAAAGCATATACGGTGTGCCAGTTTCCACTTGTGTCTCTATAATGAATT 139255 | || |||||||| ||||| || || || || ||||| || | ||| || ||| | Sbjct 16960564 AGGCGTCTTTGTAGAGCATGTAGGGCGTACCGGTTTCTGTCTGCGACTCAATTATGGCGT 16960623 Query 139256 TGAACAAGTCCCTAGCTTGTATTTGACGCACGTAAAGTT--CGTCGCGCTCGTACTTTTC 139313 ||| | ||| | | |||| | | | | | || ||| ||| | Sbjct 16960624 GCCACAGCTGTTGAGCCTTCA--CCACGCGCTTCACCCTCCCTTCCTTCTCATACCTAGT 16960681 Query 139314 GTAGAGTTCGTCGAATCGTTCACCGTAGGCGTCAGAAAGATCGCGACACTTGTCAGGACA 139373 |||||| || ||||| || || || || ||| || |||||| ||||| Sbjct 16960682 GTAGAGCTCCTCGAACTTCTCCCCCCAGCACTCGTCCAGACCGGGACACTCACTGGGACA 16960741 Query 139374 CATGAGCGACCATACGCCGTTCGCCTT-GACGCGCCTCATGAACAGATCCGGAATCCACA 139432 |||||| ||||| | | | | || || || | | |||||||||| || || ||||||| Sbjct 16960742 CATGAGTGACCAGTC-CTGGTTGCTTTCCACCCTCTTCATGAACAGGTCAGGGATCCACA 16960800 Query 139433 AAGCGAACAGCAAATCGCGCGCCTTCTTATCTTCCGAACCCATGTTACGTTTCATGTTAA 139492 ||| | | | ||| ||||| ||| || ||| || |||| || | | | Sbjct 16960801 TGGCGTAGAAGAGATCTCGCGCTCTCTGCTCCTCCTTCCCTGTGTTCTTCTTAAGATCCA 16960860 Query 139493 GGAAATCAAAAACGTCAGCGTGCCATGGTTCCAGATAGATGGCCATTGCGCCTTTCCG-- 139550 |||| ||||| |||||| ||||| || |||| || ||||| | || || || Sbjct 16960861 GGAAGTCAAAGACGTCATAATGCCAGGGCTCCAAGTAAATGGCAAAGGCTCCAGGACGCT 16960920 Query 139551 -TTTGCCACCTTGATCGACGTGTCGTACAGCATTATTGAATACGCGCAACATCGGCTCCA 139609 |||||||| ||||| |||| || | | || || | || | || ||| ||| ||| Sbjct 16960921 TGTTGCCACCCTGATCCACGTAGCGCGCTGTGTTGTTATACACTCTCAGCATGGGCACCA 16960980 Query 139610 GACCGCTCGCTGTTCCGTTGGTGCTACGGATGGGACTGTTGCGAGCTCGGACGTCATGT- 139668 | ||| | | |||||||||| | | |||| || | || || | || | Sbjct 16960981 GGCCGTTTGAGTTTCCGTTGGTCCCAGCGATGTAGCTCCCAGTGGATCTGATG-CAGCTA 16961039 Query 139669 ACATTGATGCCGATTCCGCCGCCAAATTTGGATATTAAAACGCAATCGCGTAATGTCTCG 139728 || | ||||| |||||| | | ||||| || | |||| | | || || Sbjct 16961040 ACGGCCACACCGATGCCGCCGGCCGACTTGGAGATGAGGGCGCAGTTCTTCAGCGTGTCA 16961099 Query 139729 TATATACCTCTTATGCTGTCGTCCTGCATCGTGACCAGAAAGCATGACGAAAGTTGCGGT 139788 || || ||| ||||||||||||| ||| | | ||| ||||| || || || || Sbjct 16961100 TAGATGCCTTCGATGCTGTCGTCCTTCATGGCCAGCAGGAAGCAGCTGGACAGCTGGGGC 16961159 Query 139789 AGTTTCGTGCCGGCTGCAAACAGAGTAGGACTCGCGTGCGTGAA-CATTTGTTTCGACAT 139847 | || || || || || || || || |||||| ||||| || || | | |||| Sbjct 16961160 CGGTTGGTTCCTGCGTTGAAGAGCGTGGGTGACGCGTGGGTGAACCACTTCTCT-GACAG 16961218 Query 139848 CAATTCGTACGTTTCGATGGCGCTCACAATATCCCTTCCGTGGATACCGACAGAGACTCG 139907 || | ||| || | ||||||| | ||||| | ||||||||| ||||| || || Sbjct 16961219 CAGGTTGTAGGTATTGATGGCGGCGTCGATATCATTCTTGTGGATACCAACAGACACCCG 16961278 Query 139908 CATCAGCATATGTTGGATCCGTTCGGCCACCGCGCCCTCGAtttttttCAGATA--ACCG 139965 ||| ||||| || ||| || || ||||| ||| | ||| || ||| || ||| Sbjct 16961279 CATGAGCATGTGCTGGGGACGCTCTGCCACTTTGCCGTTGATCTTCAGCAGGTAGGACC- 16961337 Query 139966 TTCTCTAGGGTCTTGTAGCCAAAG 139989 |||| || |||||| |||||||| Sbjct 16961338 -TCTCCAGAGTCTTGAAGCCAAAG 16961360 >seq19 Length=17744385 Score = 111 bits (122), Expect = 1e-19 Identities = 152/211 (72%), Gaps = 1/211 (0%) Strand=Plus/Minus Query 24701 ACGATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCC 24760 ||||||||||| ||| | || || ||||| || || || || || || || || || || Sbjct 2914524 ACGATGCAGATGTTTGTCAAGACCCTAACTGGCAAGACCATCACCCTGGAGGTCGAGCCC 2914465 Query 24761 ACCGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGAT 24820 | ||||||| |||| | || ||| |||||||| ||||| || || || ||||| || Sbjct 2914464 AGCGACACAATAGAGAACGTGAAATCCAAGATCCAGGACAAGGAGGGCATTCCTCCAGAC 2914405 Query 24821 CAACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTAT 24880 || || | | || ||||| || ||||||||||||||| | | | || || ||| Sbjct 2914404 CAGCAGAGACTCATATTTGCAGGCAAACAGCTGGAGGATGGCCGCACTCTCTCTGACTAT 2914345 Query 24881 AACATTCAAAAGGAATCGACACTACA-CTTG 24910 ||||| || ||||| || || || || |||| Sbjct 2914344 AACATCCAGAAGGAGTCCACCCTCCATCTTG 2914314 Score = 111 bits (122), Expect = 1e-19 Identities = 150/208 (72%), Gaps = 1/208 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | ||||| || || || || || ||||| || |||||||| ||| Sbjct 3998978 ATGCAGATCTTTGTCAAAACCCTCACTGGCAAGACCATTACCCTTGAAGTAGAGCCCAGT 3999037 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | ||||| ||||||||| ||||| || || || || || ||||| Sbjct 3999038 GACACCATTGAGAATGTAAAGGCAAAGATCCAGGACAAGGAGGGCATTCCCCCTGATCAG 3999097 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | |||||||||| || || |||||||| ||| | | | | || || || ||| Sbjct 3999098 CAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCTGACTACAAC 3999157 Query 24884 ATTCAAAAGGAATCGACACTACA-CTTG 24910 || || || || || || || || |||| Sbjct 3999158 ATCCAGAAAGAGTCCACCCTCCATCTTG 3999185 Score = 107 bits (118), Expect = 2e-18 Identities = 146/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 ||||||||||||| | ||||| || || || || ||||| || || || | || | | Sbjct 2910350 GATGCAGATCTTTGTCAAAACCCTGACTGGCAAGACTATCACTCTGGAGGCGGAGCCTAG 2910291 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 |||||| | |||| | ||| || ||||| || |||||||| || ||||| || || Sbjct 2910290 TGACACAATTGAAAATATCAAAGCTAAAATCCAGGATAAAGAAGGCATTCCTCCAGACCA 2910231 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || ||| | |||||||| || |||||||| |||||| | | | || || || || Sbjct 2910230 GCAGCGTCTCATCTTTGCTGGCAAACAGCTAGAGGATGGTCGCACTCTCTCCGACTACAA 2910171 Query 24883 CATTCAAAAGGAATCGACACTACA 24906 ||| || ||||| || || ||||| Sbjct 2910170 CATCCAGAAGGAGTCCACTCTACA 2910147 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||| | ||| | ||||| || || || || || || || | ||||| ||| ||| | Sbjct 2912611 ATGCAGGTGTTTGTGAAAACCCTGACTGGCAAGACCATCACCTTGGAAGTTGAACCCAGC 2912552 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || ||| |||||||| |||||||| || || || || || || Sbjct 2912551 GACACCATTGAGAACGTGAAAGCCAAGATCCAGGACAAAGAGGGCATCCCACCAGACCAG 2912492 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || ||| | |||||||| || || |||||||||||| | | | || || || ||| Sbjct 2912491 CAGCGTCTCATCTTTGCTGGAAAGCAGCTGGAGGATGGTCGCACTCTCTCTGACTACAAC 2912432 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 || || ||||| || || ||||| | ||| | || | || ||||| Sbjct 2912431 ATCCAGAAGGAGTCCACTCTACATCTTGTGCTTCGCCTTCGGGGAGG 2912385 Score = 102 bits (112), Expect = 7e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || |||||||| || ||||| || || || || || ||| | | Sbjct 2910577 ATGCAGATCTTCGTGAAGACGCTAACTGGCAAAACAATCACCCTGGAGGTGGAACCAAGT 2910518 Query 24764 GACACAGTAGA-AACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 || || |||| ||| ||| | ||| ||||| || |||||||| || || || || || Sbjct 2910517 GATACCATAGAGAACATTAAGGCCAAA-ATCCAGGATAAAGAAGGGATCCCCCCAGACCA 2910459 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || ||| | |||||||| || || ||| |||| | | | | | | || || || || Sbjct 2910458 GCAGCGTCTCATCTTTGCTGGTAAGCAGTTGGAAGGTGGTCGCACCCTCTCTGACTACAA 2910399 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 ||| || ||||| || || || ||| | ||| | |||||| | || || Sbjct 2910398 CATCCAGAAGGAGTCCACCCTCCACCTTGTGCTACGATTGAGAGGGGG 2910351 Score = 98.7 bits (108), Expect = 9e-16 Identities = 117/159 (74%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 24701 ACGATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCC 24760 || |||||||||||| | || || || || || || || || || || || || || | Sbjct 3993242 ACAATGCAGATCTTTGTAAAGACCCTCACTGGCAAGACCATCACCCTTGAGGTTGAGCCA 3993301 Query 24761 ACCGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGAT 24820 | ||||| | || | || || ||||||||| ||||| ||||| || || |||||| Sbjct 3993302 AGTGACACTATTGAGAATGTGAAGGCAAAGATCCAGGACAAGGAAGGCATTCCCCCCGAT 3993361 Query 24821 CAACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGAT 24859 || ||| | |||||||||| || ||||||||||| ||| Sbjct 3993362 CAGCAAAGGCTGATCTTTGCTGGCAAACAGCTGGAAGAT 3993400 Score = 98.7 bits (108), Expect = 9e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | ||||| || || || || || ||||| || |||||||| ||| Sbjct 3999206 ATGCAGATCTTCGTCAAAACCCTCACTGGCAAGACCATTACCCTTGAAGTAGAGCCCAGT 3999265 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | ||||| || ||||| ||||| ||||| || || || ||||| Sbjct 3999266 GACACCATTGAGAATGTAAAGGCCAAAATCCAGGACAAGGAAGGCATTCCCCCTGATCAG 3999325 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | |||||||||| || || |||||||| ||| | | | || || || ||| Sbjct 3999326 CAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGCTCCCTTTCTGACTACAAC 3999385 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 || || || || || || || || | || |||| || | ||||| Sbjct 3999386 ATCCAGAAAGAGTCCACCCTCCATCTTGTCCTGCGTCTGAGGGGAGG 3999432 Score = 96.9 bits (106), Expect = 3e-15 Identities = 147/208 (71%), Gaps = 1/208 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | ||||| || || || || || ||||| || || || || ||| Sbjct 3993473 ATGCAGATCTTCGTCAAAACCCTCACTGGCAAGACCATTACCCTTGAGGTTGAGCCCAGT 3993532 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || || ||||| ||||| ||||| || || || ||||| Sbjct 3993533 GACACCATTGAGAATGTGAAGGCCAAAATCCAGGACAAGGAAGGCATTCCCCCTGATCAG 3993592 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | |||||||||| || ||||||||||| ||| | | | | || || || ||| Sbjct 3993593 CAGAGGCTGATCTTTGCTGGCAAACAGCTGGAAGATGGCCGCACCCTCTCTGACTACAAC 3993652 Query 24884 ATTCAAAAGGAATCGACACTACA-CTTG 24910 || || || ||||| || || || |||| Sbjct 3993653 ATCCAGAAAGAATCCACCCTCCATCTTG 3993680 Score = 96.9 bits (106), Expect = 3e-15 Identities = 115/156 (74%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | ||||| || || || || || ||||| || || || || ||| Sbjct 3994229 ATGCAGATCTTCGTCAAAACCCTCACTGGCAAGACCATTACCCTTGAGGTTGAGCCCAGT 3994288 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | ||||| || ||||||||||| ||||| || || || ||||| Sbjct 3994289 GACACCATTGAGAATGTAAAGGCCAAAATCCAAGACAAGGAAGGCATTCCCCCTGATCAG 3994348 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGAT 24859 || | |||||||||| || ||||||||||| ||| Sbjct 3994349 CAGAGGCTGATCTTTGCTGGCAAACAGCTGGAAGAT 3994384 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449730896068040