Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cynoglossus_20semilaevis_20[refseq_20GCF_5F000523025.1_202014-01-28] 29,643 sequences; 470,199,494 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq19 147 2e-30 >seq19 Length=17744385 Score = 147 bits (162), Expect = 2e-30 Identities = 171/231 (74%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 29556 TTGTCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATC 29615 ||| |||||||||| |||||| || | ||| || ||||| ||||| || ||||| || || Sbjct 3999436 TTGCCCTCCCCTCAGACGCAGGACAAGATGGAGGGTGGACTCTTTCTGGATGTTGTAGTC 3999377 Query 29616 CGCAATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGG 29675 | || || ||| ||| || || || ||||||||| | |||| || |||||||| || Sbjct 3999376 AGAAAGGGAGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGG 3999317 Query 29676 CGGAATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTC 29735 ||||| || || ||||| || | ||| || ||| | || | |||||| | || Sbjct 3999316 GGGAATGCCTTCCTTGTCCTGGATTTTGGCCTTTACATTCTCAATGGTGTCACTGGGCTC 3999257 Query 29736 TACTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 ||||||||| || || || |||||||| | |||||| || || |||||||| Sbjct 3999256 TACTTCAAGGGTAATGGTCTTGCCAGTGAGGGTTTTGACGAAGATCTGCAT 3999206 Score = 143 bits (158), Expect = 2e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || ||||| | |||||| || | ||| || ||||| ||||| || ||||| || || | Sbjct 3999204 CCACCCCTAAGACGCAGGACAAGATGGAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAG 3999145 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | |||||| ||| || || || ||||||||| | |||| || |||||||| || ||| Sbjct 3999144 AGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGGGA 3999085 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 || ||||| ||||| || | ||| || ||| | || | |||||| | |||||| Sbjct 3999084 ATGCCCTCCTTGTCCTGGATCTTTGCCTTTACATTCTCAATGGTGTCACTGGGCTCTACT 3999025 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 ||||| || || || |||||||| | |||||| ||||| |||||||| Sbjct 3999024 TCAAGGGTAATGGTCTTGCCAGTGAGGGTTTTGACAAAGATCTGCAT 3998978 Score = 136 bits (150), Expect = 3e-27 Identities = 167/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 29559 TCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGC 29618 ||| ||||||| |||||| || | ||| || ||||| || || || ||||| || || | Sbjct 2910122 TCCACCCCTCAGACGCAGAACGAGATGTAGAGTGGACTCCTTCTGGATGTTGTAGTCGGA 2910181 Query 29619 AATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGG 29678 | |||||| ||| || || |||||||||||| | || | | ||||| || || || Sbjct 2910182 GAGAGTGCGACCATCCTCTAGCTGTTTGCCAGCAAAGATGAGACGCTGCTGGTCTGGAGG 2910241 Query 29679 AATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738 ||| || ||||| || || | ||| ||||| | |||| | |||||| | | || | Sbjct 2910242 AATGCCTTCTTTATCCTGGATTTTAGCTTTGATATTTTCAATTGTGTCACTAGGCTCCGC 2910301 Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || ||||| ||||| |||||||| | |||||| ||||| |||||||| Sbjct 2910302 CTCCAGAGTGATAGTCTTGCCAGTCAGGGTTTTGACAAAGATCTGCAT 2910349 Score = 136 bits (150), Expect = 3e-27 Identities = 167/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || ||||| | |||||| || | ||| || ||||| ||||| || ||||| || || | Sbjct 3993471 CCACCCCTAAGACGCAGGACAAGATGGAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAG 3993412 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | || ||| ||| || || |||||||||||| | |||| ||||||||||| || ||| Sbjct 3993411 AGGGGGCGGCCATCTTCCAGCTGTTTGCCAGCAAAGATCAGCCTTTGCTGATCGGGGGGA 3993352 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 || || || ||||| || | ||| || ||| | || | ||||||| | || || Sbjct 3993351 ATGCCTTCCTTGTCCTGGATCTTTGCCTTCACATTCTCAATAGTGTCACTTGGCTCAACC 3993292 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787 ||||| || || || |||||||| | ||| || ||||| ||||||||| Sbjct 3993291 TCAAGGGTGATGGTCTTGCCAGTGAGGGTCTTTACAAAGATCTGCATT 3993244 Score = 134 bits (148), Expect = 1e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || ||||| | |||||| || | ||| || ||||||||||| || ||||| || || | Sbjct 3993699 CCACCCCTAAGACGCAGGACAAGATGGAGGGTGGATTCTTTCTGGATGTTGTAGTCAGAG 3993640 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | |||||| ||| || || |||||||||||| | |||| || |||||||| || ||| Sbjct 3993639 AGGGTGCGGCCATCTTCCAGCTGTTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGGGA 3993580 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 || || || ||||| || | ||| || ||| | || | |||||| | || || Sbjct 3993579 ATGCCTTCCTTGTCCTGGATTTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCAACC 3993520 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 ||||| || || || |||||||| | |||||| || || |||||||| Sbjct 3993519 TCAAGGGTAATGGTCTTGCCAGTGAGGGTTTTGACGAAGATCTGCAT 3993473 Score = 132 bits (146), Expect = 4e-26 Identities = 168/231 (73%), Gaps = 4/231 (2%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || ||||| | |||||| || | ||||||||| ||||||||||| ||||| || || | Sbjct 3998976 CCACCCCTAAGACGCAGGACAAGATGAAGCGTAGATTCTTTTTGGATGTTGTAGTCGGAC 3998917 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | || ||| ||| || || || || |||||| | |||| || |||||||| || ||| Sbjct 3998916 AGAGTACGACCATCTTCCAGCTGCTTTCCAGCAAAGATCAGCCTCTGCTGATCAGGGGGA 3998857 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 || || || ||||| || | ||| || ||| |||| | |||||| | |||||| Sbjct 3998856 ATGCCTTCCTTGTCCTGGATTTTAGCCTTTACATTTTCAATGGTGTCACTGGGCTCTACT 3998797 Query 29740 TCAAGAGTTATAGTTTTGCC----AGTTAAGGTTTTAACAAATATCTGCAT 29786 ||||| || || || ||||| ||| | ||| || ||||| |||||||| Sbjct 3998796 TCAAGGGTAATGGTCTTGCCAGTGAGTGAGGGTCTTCACAAAAATCTGCAT 3998746 Score = 105 bits (116), Expect = 5e-18 Identities = 162/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 29559 TCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGC 29618 |||||| |||| ||| ||||| | ||| | ||||| || || || ||||| || || | Sbjct 2912612 TCCTCCTCTCAGACGGAGCACGAGATGTAAAGTGGACTCCTTCTGGATGTTGTAGTCGGA 2912671 Query 29619 AATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGG 29678 | ||||| ||| || | || || |||||| | || | ||| ||||| || || || Sbjct 2912672 CAGAGTGCGGCCATCTTCCAACTGCTTACCAGCAAAGATGAGTCTCTGCTGGTCTGGTGG 2912731 Query 29679 AATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738 || ||||| ||||| || | || || | | | |||| |||||| | || || Sbjct 2912732 GATTCCCTCCTTGTCCTGGATCTTGGACTTTATATTCTCTATCGTGTCACTGGGCTCAAC 2912791 Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789 || || || || ||||||||||| | |||||| ||||| |||||||| || Sbjct 2912792 CTCCAGGGTGATGGTTTTGCCAGTCAGGGTTTTCACAAACATCTGCATCTT 2912842 Score = 100 bits (110), Expect = 2e-16 Identities = 106/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 29557 TGTCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCC 29616 ||||| ||||| | |||||| || | |||||| || ||||||||||| ||||| || || Sbjct 3995331 TGTCCACCCCTAAGACGCAGGACAAGATGAAGTGTAGATTCTTTTTGGATGTTGTAGTCG 3995272 Query 29617 GCAATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGC 29676 | | || ||| || || || |||||||||||| | |||| || |||||||| || Sbjct 3995271 GAGAGAGTACGACCGTCTTCCAGCTGTTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGG 3995212 Query 29677 GGAATACCCTCTTTGTCTTG 29696 ||||| || || ||||| || Sbjct 3995211 GGAATGCCTTCCTTGTCCTG 3995192 Score = 98.7 bits (108), Expect = 8e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 29559 TCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGC 29618 |||||||| | || ||||| | ||| || ||||| || || || ||||| || || | Sbjct 2912384 TCCTCCCCGAAGGCGAAGCACAAGATGTAGAGTGGACTCCTTCTGGATGTTGTAGTCAGA 2912443 Query 29619 AATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGG 29678 | |||||| ||| || || || || |||||| | || | | ||||| || || || Sbjct 2912444 GAGAGTGCGACCATCCTCCAGCTGCTTTCCAGCAAAGATGAGACGCTGCTGGTCTGGTGG 2912503 Query 29679 AATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738 || ||||||||||| || | || ||| || | || | ||||| |||| || Sbjct 2912504 GATGCCCTCTTTGTCCTGGATCTTGGCTTTCACGTTCTCAATGGTGTCGCTGGGTTCAAC 2912563 Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787 ||| | || || || |||||||| | |||||| ||||| | ||||||| Sbjct 2912564 TTCCAAGGTGATGGTCTTGCCAGTCAGGGTTTTCACAAACACCTGCATT 2912612 Score = 96.9 bits (106), Expect = 3e-15 Identities = 115/156 (74%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 ||| || || |||||||||||| | |||| || |||||||| || ||||| || || || Sbjct 3994384 ATCTTCCAGCTGTTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGGGAATGCCTTCCTT 3994325 Query 29691 GTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750 |||||| | ||| || ||| | || | |||||| | || || ||||| || || Sbjct 3994324 GTCTTGGATTTTGGCCTTTACATTCTCAATGGTGTCACTGGGCTCAACCTCAAGGGTAAT 3994265 Query 29751 AGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || |||||||| | |||||| || || |||||||| Sbjct 3994264 GGTCTTGCCAGTGAGGGTTTTGACGAAGATCTGCAT 3994229 Score = 95.1 bits (104), Expect = 9e-15 Identities = 103/137 (75%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || ||||| | |||||| || | ||| || ||||| ||||| || ||||| || || | Sbjct 3994227 CCACCCCTAAGACGCAGGACAAGATGGAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAC 3994168 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | |||||| ||| || || |||||||||||| | |||| || |||||||| || ||| Sbjct 3994167 AGGGTGCGGCCATCTTCCAGCTGTTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGGGA 3994108 Query 29680 ATACCCTCTTTGTCTTG 29696 || || || ||||| || Sbjct 3994107 ATGCCTTCCTTGTCCTG 3994091 Score = 93.3 bits (102), Expect = 3e-14 Identities = 155/223 (70%), Gaps = 1/223 (0%) Strand=Plus/Plus Query 29572 CGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAA 29631 || || || | |||||||||||| ||||| || ||||| || || | ||| ||| | Sbjct 2910591 CGTAGGACGAGATGAAGCGTGGACTCTTTCTGGATGTTGTAGTCACACAGGGTTCGATCA 2910650 Query 29632 TCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTG 29691 || || ||||| || ||||| | || | | |||||||| || | || ||||| ||| Sbjct 2910651 TCTTCCAGTTGCTTAGCAGCAAAAATGAGACGCTGCTGATCTGGAGAGATTCCCTCCTTG 2910710 Query 29692 TCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATA 29751 || || | ||| ||| ||| | | | | ||||| | || || || | ||||| Sbjct 2910711 TCCTGGATTTTAGATTTTACATTCTTGAAACTGTCACTTGGCTCAACCTCCAATGTTATG 2910770 Query 29752 GTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT-TTTAAAA 29793 || || || || | ||| |||||||| |||||||| |||| || Sbjct 2910771 GTCTTCCCGGTCAGGGTCTTAACAAACATCTGCATCTTTACAA 2910813 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || || ||||| || ||||| | || || ||||| || || || ||||| || || | Sbjct 2910351 CCCCCTCTCAATCGTAGCACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAG 2910410 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | ||||||| | | || | || || |||||| | || | | ||||| || || || Sbjct 2910411 AGGGTGCGACCACCTTCCAACTGCTTACCAGCAAAGATGAGACGCTGCTGGTCTGGGGGG 2910470 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTT-TCTACAGTGTCAGAAAGTTCTAC 29738 || || ||||| || || | |||| | | | ||| |||| || ||| |||| || Sbjct 2910471 ATCCCTTCTTTATCCTGGA-TTTTGGCCTTAATGTTCTCTATGGTATCACTTGGTTCCAC 2910529 Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || || || || ||||||||||||| || || || || |||||||| Sbjct 2910530 CTCCAGGGTGATTGTTTTGCCAGTTAGCGTCTTCACGAAGATCTGCAT 2910577 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385080030294663