Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cynoglossus_20semilaevis_20[refseq_20GCF_5F000523025.1_202014-01-28] 29,643 sequences; 470,199,494 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq19 131 1e-24 seq13 98.7 7e-15 seq14 87.8 1e-11 >seq19 Length=17744385 Score = 131 bits (144), Expect = 1e-24 Identities = 116/145 (80%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 282332 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 282391 || || || | |||||| |||| ||||| ||||| || ||||||||||||||||| ||| Sbjct 6838411 TTCTTGTCCAAACCATAGGCAATGGCAGCTGCAGTGGGCTCATTAATAATTCTCAATACA 6838470 Query 282392 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 282451 ||||| |||| ||| |||| || ||||| || ||||| | ||| || || || || ||| Sbjct 6838471 TTAAGGCCAGAGATTGTTCCAGCGTCTTTGGTTGCTTGGCGTTGAGAGTCATTGAAGTAT 6838530 Query 282452 GCAGGAACAGTAATAACGGCATCTG 282476 ||||||||||| || ||||||| || Sbjct 6838531 GCAGGAACAGTGATGACGGCATTTG 6838555 Score = 104 bits (114), Expect = 2e-16 Identities = 112/147 (76%), Gaps = 1/147 (1%) Strand=Plus/Minus Query 282332 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 282391 ||||| || | |||||| |||| |||||||||||| ||||||||||| || | ||| ||| Sbjct 6849263 TTTTTGTCCAAACCATAGGCAATAGCAGCAGCAGTGGGTTCATTAATGATACGCAAGACA 6849204 Query 282392 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 282451 ||||| || | || |||| ||||| |||||||| || | || || || || || || Sbjct 6849203 TTAAGGCCTGAGATAGTTCCAGCATCCTTAGTGGCCTGACGCTGAGAGTCATTGAAGTAA 6849144 Query 282452 GCAGGAACAGTAATAACGGCATCTGTT 282478 || || || || || || |||| |||| Sbjct 6849143 GCTGGCACTGTGATGACTGCAT-TGTT 6849118 Score = 102 bits (112), Expect = 6e-16 Identities = 134/186 (72%), Gaps = 0/186 (0%) Strand=Plus/Minus Query 282690 CAAAAATAGTATTGGTTGGATTAACTGCAGCTTGATATTTGGCTGCATCTCCAATCAGAT 282749 |||| | || ||||| || || | ||| | |||| ||||||||||||||||||| Sbjct 6848522 CAAAGACTGTGTTGGTGGGGTTCATAGCAACCTGATTCTTGGCTGCATCTCCAATCAACC 6848463 Query 282750 GTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCATTCGCAA 282809 ||||| ||||| || | |||||| || ||||| | || || || || || |||| Sbjct 6848462 TTTCTGAGTCTGTGAAAGCAACATAACTGGGTGTTGTCCTGTTGCCCTGGTCGTTGGCAA 6848403 Query 282810 TAATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAAGTTGTTCCTAAATCAA 282869 | ||||||||||| |||| || ||||||| ||||| | || || || | ||||| Sbjct 6848402 TGATTTCAACTTTGCCATGCTGGAATACACCAACACAGGAGTAGGTGGTCCCAAGATCAA 6848343 Query 282870 TACCAA 282875 |||||| Sbjct 6848342 TACCAA 6848337 Score = 98.7 bits (108), Expect = 7e-15 Identities = 132/183 (72%), Gaps = 2/183 (1%) Strand=Plus/Plus Query 282693 AAATA--GTATTGGTTGGATTAACTGCAGCTTGATATTTGGCTGCATCTCCAATCAGATG 282750 ||||| || ||||| ||||| | |||| | |||| |||||||||||||||||||| Sbjct 6839035 AAATACTGTGTTGGTGGGATTCATTGCAACCTGATTCTTGGCTGCATCTCCAATCAGCCT 6839094 Query 282751 TTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCATTCGCAAT 282810 ||||| || || || | || || || || || | || || || ||||| ||||| Sbjct 6839095 CTCTGTGTCAGTGAAGGCCACGTAGCTGGGTGTGGTCCTGTTGCCCTGGTCATTGGCAAT 6839154 Query 282811 AATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAAGTTGTTCCTAAATCAAT 282870 ||||||||||| |||| || ||||||| ||||| | || || || | |||||| Sbjct 6839155 GATTTCAACTTTGCCATGCTGGAATACACCAACACAGGAGTAGGTGGTCCCGAGATCAAT 6839214 Query 282871 ACC 282873 ||| Sbjct 6839215 ACC 6839217 Score = 95.1 bits (104), Expect = 9e-14 Identities = 111/150 (74%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 281417 TTATCAGCGGCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATT 281476 || ||||| |||| ||||| | ||| ||||||||||| | ||||||||| |||||||| Sbjct 6837177 TTGTCAGCAGCAGAGACATTCATAATGCCATTGGCATCAATATCAAATGTCACTTCAATC 6837236 Query 281477 TGAGGGACCCCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTA 281536 ||||| || || | ||||||| ||||| || || | |||| | |||| ||| Sbjct 6837237 TGAGGAACACCACGGGGAGCAGGGGGGATGCCCGTCAGCTCAAATTTACCCAACAAATTG 6837296 Query 281537 TTATCTTTAGTGAATTTTCGTTCACCCTCG 281566 || ||||| || | | |||||||||||| Sbjct 6837297 TTGTCTTTGGTCATTGCACGTTCACCCTCG 6837326 Score = 95.1 bits (104), Expect = 9e-14 Identities = 111/150 (74%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 281417 TTATCAGCGGCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATT 281476 || ||||| |||| ||||| | ||| ||||||||||| | ||||||||| |||||||| Sbjct 6850471 TTGTCAGCAGCAGAGACATTCATAATGCCATTGGCATCAATATCAAATGTCACTTCAATC 6850412 Query 281477 TGAGGGACCCCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTA 281536 ||||| || || | ||||||| ||||| || || | |||| | |||| ||| Sbjct 6850411 TGAGGAACACCACGGGGAGCAGGGGGGATGCCCGTCAGCTCAAATTTACCCAACAAATTG 6850352 Query 281537 TTATCTTTAGTGAATTTTCGTTCACCCTCG 281566 || ||||| || | | |||||||||||| Sbjct 6850351 TTGTCTTTGGTCATTGCACGTTCACCCTCG 6850322 >seq13 Length=21921923 Score = 98.7 bits (108), Expect = 7e-15 Identities = 107/142 (75%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 282332 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 282391 ||||| || || || || |||| || |||||||| || ||||| || || | | || | Sbjct 10464531 TTTTTGTCCAGGCCGTAAGCAATGGCTGCAGCAGTGGGCTCATTGATGATGCGGAGAATA 10464472 Query 282392 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 282451 ||||| ||| ||| |||| ||||||||||| || || | || || || || ||||| Sbjct 10464471 TTAAGTCCACTAATGGTTCCAGCATCTTTAGTTGCCTGGCGCTGGGAGTCATTGAAATAG 10464412 Query 282452 GCAGGAACAGTAATAACGGCAT 282473 ||||||||||| ||||| |||| Sbjct 10464411 GCAGGAACAGTGATAACTGCAT 10464390 Score = 91.5 bits (100), Expect = 1e-12 Identities = 101/135 (75%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 281431 CACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCT 281490 |||||| ||||| ||||||||||| | ||||| || || ||||| |||||||| ||||| Sbjct 10465722 CACATTCAGAATGCCATTGGCATCAATGTCAAAGGTCACCTCAATCTGAGGGACTCCTCT 10465663 Query 281491 CTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAA 281550 ||||||| || || || || | ||| | |||||| |||||||||| || || | Sbjct 10465662 GGGAGCAGGAGGAATTCCCGTCAGCTCAAACTTGCCCAGAATATTATTATCCTTTGTCAT 10465603 Query 281551 TTTTCGTTCACCCTC 281565 || |||||||| Sbjct 10465602 GGCTCTCTCACCCTC 10465588 >seq14 Length=28847931 Score = 87.8 bits (96), Expect = 1e-11 Identities = 87/113 (77%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 282368 GGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCT 282427 || ||||| || ||||||| |||||||||||||||||| |||| ||||| || || || Sbjct 24211830 GGCTCATTGATGATTCTCATAACATTAAGACCAGCAATGGTTCCGGCATCCTTGGTAGCC 24211889 Query 282428 TGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCTGTTAC 282480 || | || | |||||| || || ||||| ||||| | || |||| ||| || Sbjct 24211890 TGACGCTGGGCATCGTTGAAGTAGGCAGGGACAGTGACCACAGCATGTGTGAC 24211942 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3739175053971318