Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cynoglossus_20semilaevis_20[refseq_20GCF_5F000523025.1_202014-01-28] 29,643 sequences; 470,199,494 total letters Query= NC_024696.1 Length=180800 Score E Sequences producing significant alignments: (Bits) Value seq6 210 3e-49 >seq6 Length=18840743 Score = 210 bits (232), Expect = 3e-49 Identities = 591/880 (67%), Gaps = 38/880 (4%) Strand=Plus/Plus Query 162120 ATCGAACTTGTTCGCGAACAGGTGATGCGAGTTCT-TCAATATCCAATTAAGAT--CCCC 162176 ||| |||||||| || |||||||| || || | | || | ||| ||||| | || Sbjct 8843683 ATCAAACTTGTTGGCAAACAGGTGCTG----TTGTCTAAAGAGCCAC--AAGATGTCACC 8843736 Query 162177 CGATCCGAACACGCACACGGACCGCACGTGCACGCCGCTGCACGGCGGATACAGGGCCCC 162236 | ||| |||| ||||| | || || | ||| |||| | || ||| | || || Sbjct 8843737 AGCTCCATACACACACACCGCTCGTCTGTAGGCACCGGTGCAGTGAGGGTACGGAGCTCC 8843796 Query 162237 ATCGTCCACATCCCCCTCGTAGTATTGCCACTTAACGAACCTAGTGATAGCCTGCATGTC 162296 | || ||| || || | ||| |||||| || | || || | |||||||||||| Sbjct 8843797 GTTGTTCACGTCACCGGCCAGGTAGCTCCACTTGACCACCCGAGCTAAAGCCTGCATGTC 8843856 Query 162297 GGAGGTGTCGTACTTGTACACTGAC-GGCACGGCTCCAGGAACACCCGGCAGTCTCTGTA 162355 ||| |||||||| | || | || || | ||| || || |||| ||||| | Sbjct 8843857 GGATACATCGTACTTA-ATGTTGGCTGGTACAGATCCGGGGACCGAGGGCATCCTCTGGA 8843915 Query 162356 GAGTAGCCCACAGGTGTTCGTCTGGACTATACGTCTCCTTCGACCACTCCATGAACTCCC 162415 || ||||||| |||||||||||| || ||||| |||||| |||||| ||||| | | Sbjct 8843916 ACGTGGCCCACATGTGTTCGTCTGGGCTGTACGTGTCCTTCTCCCACTCAATGAATTTC- 8843974 Query 162416 TGACCGT-TTTATC--GTATAGAATGTAAGAGACGTAGGACCTGGTCACAATAAAGTACG 162472 || | | ||| || | || ||| || || | |||| ||||||| ||| | Sbjct 8843975 TGCGCTTCTTTGTCCCGCATCACATG--AGTCACAAATTCTCTGGAAACAATAATGTAGG 8844032 Query 162473 CGCTACCAGAAAACACGGGTATGCGTATAGGAGGGGGCTCTTTGTCTTGACCCGTGTTGA 162532 | |||| || |||| || |||||||||| || || |||| || | || ||| Sbjct 8844033 CATTACCTGAGAACATCGGGCTGCGTATAGGTGGAGGA-CTTT-TCGTCACATCTGTC-- 8844088 Query 162533 CTACC-ATTCCCTCTACGACCACGTGTCTCTTCCTCCACCTGGCCATCTTACTGGTAGAC 162591 ||| | || || || |||| | | ||||| | | |||| |||| | Sbjct 8844089 CTAACGATGGAGTCCGTAACTTCGTGGTGATACTGCCACCGTGGCTTCTT----GTAGTC 8844144 Query 162592 G--GGTGTTCG--GTCTCTAGACTGTTACGACCCCCCAAGGCCTTCAGCTGAC-GCACCA 162646 | ||||||| ||||| | ||||| | || ||||| |||||| || | | || | Sbjct 8844145 GATGGTGTTCTCCGTCTCCATGCTGTTCCTCCCATTCAAGGTCTTCAG-TGCCTGTACGA 8844203 Query 162647 TCTCTAGATTGGTCTTAAGGGGAAAGTCGGTGCCGCAGAGATTAATAACATATTTCCACT 162706 | || ||||| |||| ||||||||| ||||| ||| || | | ||| ||||||| Sbjct 8844204 TTTCGCCGTTGGTTTTAATGGGAAAGTCTGTGCCACAGGTGTTCAGCAGATACTTCCACT 8844263 Query 162707 TAACGCTGAGTCCGTA-CAGATCCTGTAGACAGTTCAGATCGGCCTGGACGCGACTCCAC 162765 | |||||| | | | |||||||| | ||||||||||| || ||||| || |||| Sbjct 8844264 TGACGCTG-GACTTCAGCAGATCCTCCATGCAGTTCAGATCAGCTTGGACTCGGGTCCAA 8844322 Query 162766 GACGCGTACACGACGCTCTCCAACCTAGTGGCGACAAAGACATTGTCGAAACACGAAACT 162825 ||||||||||||||| | || ||| || |||||| || || ||| ||||| | | | Sbjct 8844323 GACGCGTACACGACGTTTTCTAACTTACTGGCGATGAACACGTTGGGAAAACAGGCAGCG 8844382 Query 162826 ATCCCCATCACGGCC-AGTGAGA-ACATCGGGTCCGCTTTCCTATCTACGTGTACGCAGT 162883 |||||| ||||||| |||| | | || || || ||| || || || || |||| Sbjct 8844383 ATCCCCGCCACGGCCTTGTGAAATTCCTCCGG--CGACTTCTGGTCCACATGCACACAGT 8844440 Query 162884 ATAGATTCTGAGGGGCGTAGATGGCCCTCAGTAATCTCTCGAACATCTCTATCTTATGGT 162943 | | |||||||| |||||||||| | ||| | || || |||||||| || || | | Sbjct 8844441 AGACGTTCTGAGGAGCGTAGATGGATCGCAGAAGTCGTTCAAACATCTCGATTTTTTCAT 8844500 Query 162944 GTACCACGATAGAATACGCTATGGGGAACTCAGCCTCCTC 162983 | | ||| || ||||| || |||||||| || |||||| Sbjct 8844501 GGATCACTATGGAATAAGCGATGGGGAAGTCCTTCTCCTC 8844540 Score = 176 bits (194), Expect = 5e-39 Identities = 279/391 (71%), Gaps = 8/391 (2%) Strand=Plus/Plus Query 162597 TTCGGTCTCTAGACTGTTACGACCCCCCAAGGCCTTCAGCTGAC-GCACCATCTCTAGAT 162655 |||| |||| | ||||| | || ||||| |||||| || | | || || || | Sbjct 8840849 TTCGCTCTCCATGCTGTTCCTCCCATTCAAGGTCTTCAG-TGCCTGTACGATTTCGCCGT 8840907 Query 162656 TGGTCTTAAGGGGAAAGTCGGTGCCGCAGAGATTAATAACATATTTCCACTTAACGCTGA 162715 |||| |||| ||||||||| ||||| ||| || | | ||| |||||||| |||||| Sbjct 8840908 TGGTTTTAATGGGAAAGTCTGTGCCACAGGTGTTCAGCAGATACTTCCACTTGACGCTG- 8840966 Query 162716 GTCCGTA-CAGATCCTGTAGACAGTTCAGATCGGCCTGGACGCGACTCCACGACGCGTAC 162774 | | | |||||||| | ||||||||||| || ||||| || |||| ||||||||| Sbjct 8840967 GACTTCAGCAGATCCTCCATGCAGTTCAGATCAGCTTGGACTCGGGTCCAAGACGCGTAC 8841026 Query 162775 ACGACGCTCTCCAACCTAGTGGCGACAAAGACATTGTCGAAACACGAAACTATCCCCATC 162834 |||||| | || ||| || |||||| || || ||| ||||| | ||| ||| || | Sbjct 8841027 ACGACGTTTTCTAACTTACTGGCGATGAACACGTTGGGAAAACAGGCAACAATCGCCGCC 8841086 Query 162835 ACGGCC-AGTGAGA-ACATCGGGTCCGCTTTCCTATCTACGTGTACGCAGTATAGATTCT 162892 |||||| |||| | | || || || ||| || || || || ||||| | |||| Sbjct 8841087 ACGGCCTTGTGAAATTCCTCCGG--CGACTTCTGGTCCACATGCACACAGTAGACGTTCT 8841144 Query 162893 GAGGGGCGTAGATGGCCCTCAGTAATCTCTCGAACATCTCTATCTTATGGTGTACCACGA 162952 |||| |||||||||| | ||| | || ||| |||||||| || || | || | ||| | Sbjct 8841145 GAGGAGCGTAGATGGATCGCAGAAGTCGCTCAAACATCTCGATTTTTTCATGGATCACTA 8841204 Query 162953 TAGAATACGCTATGGGGAACTCAGCCTCCTC 162983 | ||||| || |||||||| || |||||| Sbjct 8841205 TGGAATAAGCGATGGGGAAGTCCTTCTCCTC 8841235 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578217669252800