Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cynoglossus_20semilaevis_20[refseq_20GCF_5F000523025.1_202014-01-28] 29,643 sequences; 470,199,494 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq19 118 7e-22 seq14 84.2 1e-11 >seq19 Length=17744385 Score = 118 bits (130), Expect = 7e-22 Identities = 165/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 || |||||||| |||| ||| | || || ||| ||| || || |||||||| || ||| Sbjct 2910351 CCCCCTCTCAATCGTAGCACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAG 2910410 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || ||||| | | ||||| || || || ||||| || | ||||||||| ||| | || Sbjct 2910411 AGGGTGCGACCACCTTCCAACTGCTTACCAGCAAAGATGAGACGCTGCTGGTCTGGGGGG 2910470 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | |||||||| || ||||| || || | || | ||| || |||| |||||| Sbjct 2910471 ATCCCTTCTTTATCCTGGATTTTGGCCTT-AATGTTCTCTATGGTATCACTTGGTTCCAC 2910529 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 || | ||||| ||||| || |||| ||| || || |||||||||||| Sbjct 2910530 CTCCAGGGTGATTGTTTTGCCAGTTAGCGTCTTCACGAAGATCTGCATA 2910578 Score = 111 bits (122), Expect = 1e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| |||| ||| | || | |||||||||| ||| || || |||||||| |||||| Sbjct 2910123 CCACCCCTCAGACGCAGAACGAGATGTAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAG 2910182 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || ||||| | || || | ||||| || ||||| || | ||||||||| ||| | || Sbjct 2910183 AGAGTGCGACCATCCTCTAGCTGTTTGCCAGCAAAGATGAGACGCTGCTGGTCTGGAGGA 2910242 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCACG-GTGTCGCTTGATTCCAC 33701 | |||||||| || ||||| ||| | || ||| ||||| || | ||| | Sbjct 2910243 ATGCCTTCTTTATCCTGGATTTTAGCTTTGAT-ATTTTCAATTGTGTCACTAGGCTCCGC 2910301 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || | ||||| || || || || | ||||| |||||||||||||| Sbjct 2910302 CTCCAGAGTGATAGTCTTGCCAGTCAGGGTTTTGACAAAGATCTGCAT 2910349 Score = 100 bits (110), Expect = 2e-16 Identities = 163/232 (70%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| || | ||| | || | ||| || ||| |||||| || |||||||| || ||| Sbjct 3993471 CCACCCCTAAGACGCAGGACAAGATGGAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAG 3993412 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || | ||| | || |||| ||||| || ||||| |||| | |||||||| | || Sbjct 3993411 AGGGGGCGGCCATCTTCCAGCTGTTTGCCAGCAAAGATCAGCCTTTGCTGATCGGGGGGA 3993352 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCACG-GTGTCGCTTGATTCCAC 33701 | ||||| ||||| || || |||| ||| ||| ||||| |||| || || Sbjct 3993351 ATGCCTTCCTTGTCCTGGATCTTTGCCTTCA-CATTCTCAATAGTGTCACTTGGCTCAAC 3993293 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATAGTT 33753 |||| ||||| || || || || | || ||||||||||||||||| ||| Sbjct 3993292 CTCAAGGGTGATGGTCTTGCCAGTGAGGGTCTTTACAAAGATCTGCATTGTT 3993241 Score = 98.7 bits (108), Expect = 7e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| || | ||| | || | ||| || ||| ||||| || |||||||| || ||| Sbjct 3993699 CCACCCCTAAGACGCAGGACAAGATGGAGGGTGGATTCTTTCTGGATGTTGTAGTCAGAG 3993640 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || ||||| | || |||| ||||| || ||||| |||| | ||||||||| | || Sbjct 3993639 AGGGTGCGGCCATCTTCCAGCTGTTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGGGA 3993580 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCAC-GGTGTCGCTTGATTCCAC 33701 | ||||| ||||| ||||| |||| ||| ||| |||||| || | || || Sbjct 3993579 ATGCCTTCCTTGTCCTGGATTTTGGCCTTCA-CATTCTCAATGGTGTCACTGGGCTCAAC 3993521 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 |||| || || || || || || | ||||| || ||||||||||| Sbjct 3993520 CTCAAGGGTAATGGTCTTGCCAGTGAGGGTTTTGACGAAGATCTGCAT 3993473 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| || | ||| | || | ||| || ||| |||||| || |||||||| || ||| Sbjct 3999204 CCACCCCTAAGACGCAGGACAAGATGGAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAG 3999145 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || ||||| | || |||| || || || ||||| |||| | ||||||||| | || Sbjct 3999144 AGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGGGA 3999085 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCAC-GGTGTCGCTTGATTCCAC 33701 | || || ||||| || || || | |||| ||| |||||| || | || || Sbjct 3999084 ATGCCCTCCTTGTCCTGGATCTT-TGCCTTTACATTCTCAATGGTGTCACTGGGCTCTAC 3999026 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 |||| || || || || || || | ||||| |||||||||||||| Sbjct 3999025 TTCAAGGGTAATGGTCTTGCCAGTGAGGGTTTTGACAAAGATCTGCAT 3998978 Score = 84.2 bits (92), Expect = 1e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 || || |||| ||| | || | ||| || ||| |||||| || |||||||| || || Sbjct 3999432 CCTCCCCTCAGACGCAGGACAAGATGGAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAA 3999373 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || | ||| | || |||| || || || ||||| |||| | ||||||||| | || Sbjct 3999372 AGGGAGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGGGA 3999313 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCAC-GGTGTCGCTTGATTCCAC 33701 | ||||| ||||| ||||| || | ||| ||| |||||| || | || || Sbjct 3999312 ATGCCTTCCTTGTCCTGGATTTTGGCCTTTA-CATTCTCAATGGTGTCACTGGGCTCTAC 3999254 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 |||| || || || || || || | ||||| || ||||||||||| Sbjct 3999253 TTCAAGGGTAATGGTCTTGCCAGTGAGGGTTTTGACGAAGATCTGCAT 3999206 >seq14 Length=28847931 Score = 84.2 bits (92), Expect = 1e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 || ||||||| ||| | || | ||| || | | || || || |||||||| || || Sbjct 12557383 CCTCCTCTCAGACGGAGAACAAGATGGAGGGGGGATTCCTTCTGGATGTTGTAGTCAGAA 12557442 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || |||||| | || || | ||| || || ||||| |||| ||||||||||||| | || Sbjct 12557443 AGGGTGCGTCCATCTTCAAGTTGCTTACCAGCAAAGATCAGACGCTGCTGATCTGGGGGG 12557502 Query 33643 ACACCTTCTTTGTC 33656 | ||||||||| || Sbjct 12557503 ATACCTTCTTTTTC 12557516 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328585247770560