Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cynoglossus_20semilaevis_20[refseq_20GCF_5F000523025.1_202014-01-28] 29,643 sequences; 470,199,494 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq19 96.9 8e-15 >seq19 Length=17744385 Score = 96.9 bits (106), Expect = 8e-15 Identities = 145/206 (70%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| ||||| || || || ||||| ||||| |||| || || |||| Sbjct 2912836 CAGATGTTTGTGAAAACCCTGACTGGCAAAACCATCACCCTGGAGGTTGAGCCCAGTGAC 2912777 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || | || ||||| ||||| || || || || ||||| || ||| || Sbjct 2912776 ACGATAGAGAATATAAAGTCCAAGATCCAGGACAAGGAGGGAATCCCACCAGACCAGCAG 2912717 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 ||||| ||||| || || ||||||||||||||||| | ||| || |||| |||||| || Sbjct 2912716 AGACTCATCTTTGCTGGTAAGCAGTTGGAAGATGGCCGCACTCTGTCCGACTACAACATC 2912657 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGT 206378 ||||| ||||| ||| | || || || Sbjct 2912656 CAGAAGGAGTCCACTTTACATCTCGT 2912631 Score = 87.8 bits (96), Expect = 4e-12 Identities = 138/195 (71%), Gaps = 2/195 (1%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGA-ATC 206243 || ||||| || || ||||| ||||| |||| |||||| ||| || | || | | Sbjct 2910562 AAGACGCTAACTGGCAAAACAATCACCCTGGAGGTGGAACCAAGTGATACCATAGAGAAC 2910503 Query 206244 AGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 | ||| || ||| || || || |||||||| || || ||| || | || ||||| Sbjct 2910502 ATTAAGGCCAAA-ATCCAGGATAAAGAAGGGATCCCCCCAGACCAGCAGCGTCTCATCTT 2910444 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363 || || ||||||||||||| ||| | || | | || |||||| ||||||| ||||| Sbjct 2910443 TGCTGGTAAGCAGTTGGAAGGTGGTCGCACCCTCTCTGACTACAACATCCAGAAGGAGTC 2910384 Query 206364 TACTCTTCACCTTGT 206378 || || |||||||| Sbjct 2910383 CACCCTCCACCTTGT 2910369 Score = 87.8 bits (96), Expect = 4e-12 Identities = 143/206 (69%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| |||||| ||||| || || || || || | ||||| || |||| Sbjct 3998981 CAGATCTTTGTCAAAACCCTCACTGGCAAGACCATTACCCTTGAAGTAGAGCCCAGTGAC 3999040 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || | || |||||| |||||| || || || || || ||| || || || Sbjct 3999041 ACCATTGAGAATGTAAAGGCAAAGATCCAGGACAAGGAGGGCATTCCCCCTGATCAGCAG 3999100 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 || || ||||| || || |||||| |||||||||| | || | | || |||||| || Sbjct 3999101 AGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCTGACTACAACATC 3999160 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGT 206378 ||||||||||| || || || ||||| Sbjct 3999161 CAGAAAGAGTCCACCCTCCATCTTGT 3999186 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181371943352203