Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cynoglossus_20semilaevis_20[refseq_20GCF_5F000523025.1_202014-01-28] 29,643 sequences; 470,199,494 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq4 253 2e-62 seq19 109 5e-19 seq14 95.1 1e-14 >seq4 Length=20010643 Score = 253 bits (280), Expect = 2e-62 Identities = 960/1487 (65%), Gaps = 32/1487 (2%) Strand=Plus/Plus Query 146938 TTGCTAGTGAAAGGCTCAAAAGACTCATTATTGCCTAATATTTGGGCCGTGGTTGCGGTA 146997 ||||| ||| | ||||| | ||||| || ||||| | || ||||| |||| || || Sbjct 16959927 TTGCTGGTGTAGGGCTCGATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAGGCTGTG 16959986 Query 146998 GGCATGTACGCCACCAACAATGAATTTCGCAGACCGTACGCACGGA--TGTTGTCCTTCA 147055 |||||| |||| || || || | | | ||| | | ||| | || ||||||| Sbjct 16959987 GGCATGGGGGCCATCAGCA--GACTGTTCCTGACTCCATGTTTGGAGATCTTCTCCTTCA 16960044 Query 147056 AAGTTTGCCAGTCCCACATCGACGAGGGCGTCACGTTCCACATGTCGTACTGGAGCACTC 147115 ||||||||||| | ||||||| | ||||||||||||||| || | | Sbjct 16960045 GCAGGGCCCAGTCCCACAGGTCTGTGGGCGTCTTCTCCCACATGTCGTACTGAAGGATGC 16960104 Query 147116 CTCGACTGGCGGGACTGCCAGCGAACGTAGTGTAGCTTCCGTCGCGCTGC-GCCAATTCA 147174 | ||| | ||| || || |||| ||| || | |||| |||| || Sbjct 16960105 CCTTGCTGACTGGAGACCCTTCGTACGTCTCATAGGGGCCCAA-CTCTGCAGCCAGCTCG 16960163 Query 147175 CAGCTTGCCTCGAGCGCTCCATAGTATATGGTTTCGGCGATTTGTTTGTTTAGGACGGTC 147234 ||||| ||||| || || | ||||| ||||| ||| |||||| |||| || | Sbjct 16960164 CAGCTGGCCTCTAGGGCGGCGTAGTAGATGGTCTCGAAGATTTGGATGTTGAGCAGCTGA 16960223 Query 147235 GCTTCTTCGCTCTCGTAAGGCATACGCAGAAGCACAAAGGCATCGGCCAAACCCTGGATA 147294 ||||| ||| || |||| | ||||| || | ||||| || |||| |||||||| | Sbjct 16960224 GCTTCAGGGCTTTCAAAAGGGAAACGCATCAGGATGAAGGCGTCTGCCAGACCCTGGACA 16960283 Query 147295 CCGACGCCGATAGGTCGATGCTTTTCGTTGCTGCGCTTCGCGCTCGCT-ATGGGATAGTG 147353 || | || || || | || | |||| | | || |||| | ||||||| Sbjct 16960284 CCAATTCCTATTGGCCTGTGGCGCTTGTTGGAGTTTTCAGC-CTCGGGCACAGGATAGTA 16960342 Query 147354 GTTGCGATCAATAATCTTGTTGAGGTTACGCACTACAACTTTAGTTATTGTTTTGAGTTT 147413 |||| || || |||||||| || || | || | || || || | | | ||||| Sbjct 16960343 GTTGATGTCTATGATCTTGTTCAGATTTCTGACGATCACCTTGGTCACCTGTGTCAGTTT 16960402 Query 147414 CTCGAAATCATAAGTCCCGTCTTCGAC-ACGTACGCATTGGTTCACGGCGATAGACGCCA 147472 | ||| |||||||||| ||| | |||||| || ||| | ||||| ||||||| Sbjct 16960403 GTTGAAGTCATAAGTCCGCTCTGGGGTGACGTAC--AT--GTTGAGAGCGATGGACGCCA 16960458 Query 147473 GATTGCAGACGGCCGTCTCTTCGGCGTCGCTGTACTGCACGATTTCGGCGCACAGGTTGC 147532 |||| || |||||| ||| || | | | |||||| ||||||||| | ||||||||||| Sbjct 16960459 GATTACAAACGGCCACCTCGTCTGTGCTGGTGTACTCCACGATTTCTGTGCACAGGTTGC 16960518 Query 147533 TGCATTTTATGACTCCCAAATTTTGCTGATTGCTTTTCCGATTGCACGCGTCTTTGAAGA 147592 |||| || ||| |||| || ||||| ||||| |||| ||||| ||||||||| ||| Sbjct 16960519 TGCACTTGATGGTGCCCAGGTTCTGCTGGTTGCTCTTCCTGTTGCAGGCGTCTTTGTAGA 16960578 Query 147593 GCATGTACGGTCCGCCGGTCTCGACTTGCGTTTCAACGATAAACCTATGCAGGTCCTGCG 147652 ||||||| || ||||| || |||| |||| || ||| | || | Sbjct 16960579 GCATGTAGGGCGTACCGGTTTCTGTCTGCGACTCAATTATGGCGTGCCACAGCTGTTGAG 16960638 Query 147653 C--TC-GCACCCGCTGCCGATAGCGGCCC-TCGTTTTCGTACCGCTCGTACAACCGCTCA 147708 | || ||| |||| | | | ||| || || || |||| ||| | | ||| Sbjct 16960639 CCTTCACCACGCGCTTC----ACCCTCCCTTCCTTCTCATACCTAGTGTAGAGCTCCTCG 16960694 Query 147709 AACTCGTCGCCGTAGCAATCGGCAAGGCCGGGACACTGATGCGGACACATCAGCGACCAC 147768 |||| || || |||| ||| | || |||||||||| | |||||||| || ||||| Sbjct 16960695 AACTTCTCCCCCCAGCACTCGTCCAGACCGGGACACTCACTGGGACACATGAGTGACCAG 16960754 Query 147769 ATGTCGTCCGCGTT-AACGCGTCGCATAAACAGATCCGGCACCCACAGCGCGTACATAAG 147827 | || || || || | ||| ||||| || || | ||||| ||||| | || Sbjct 16960755 TCCTGGT-TGCTTTCCACCCTCTTCATGAACAGGTCAGGGATCCACATGGCGTAGAAGAG 16960813 Query 147828 ATCGCGCGCTTTGCAATCCTCGGCGCCCATGTTGCGTTTCAAATTAAGCACGCTATAGAT 147887 ||| |||||| | ||||| || |||| || | || || | | | ||| Sbjct 16960814 ATCTCGCGCTCTCTGCTCCTCCTTCCCTGTGTTCTTCTTAAGATCCAGGAAGTCAAAGAC 16960873 Query 147888 GTCGGCGTGCCAGGGTTCAATGTAGACGGCCAGCGCACCTTTACGC---TTTCCGCCCTG 147944 ||| |||||||| || | ||| | ||| | || || |||| || || ||||| Sbjct 16960874 GTCATAATGCCAGGGCTCCAAGTAAATGGCAAAGGCTCCAGGACGCTTGTTGCCACCCTG 16960933 Query 147945 GTCGACATGGCGCACCATGTTGTTAAACACGCGCACCATGGGTTCCAGGCCGCTCGCAGT 148004 || || | |||| | |||||||| |||| | || |||||| |||||||| | | | Sbjct 16960934 ATCCACGTAGCGCGCTGTGTTGTTATACACTCTCAGCATGGGCACCAGGCCGTTTGAGTT 16960993 Query 148005 GCCGTTGGTGGAATTGATCTTGCTGCCGCGGGCTCGCACTTCGTGCACGTTAACGCCAAT 148064 |||||||| | ||| | ||| || || || | | ||| || || || Sbjct 16960994 TCCGTTGGTCCCAGCGATGTAGCTCCCAGTGGATCTGATGCAGCTAACGGCCACACCGAT 16961053 Query 148065 GCCGCCGCCGTACTTTGATATGGCAGCGCAATCGCCCAATGTCGTGTAGATGCCGTCGAT 148124 ||||||| | |||| || ||| ||||| | || || |||||||| ||||| Sbjct 16961054 GCCGCCGGCCGACTTGGAGATGAGGGCGCAGTTCTTCAGCGTGTCATAGATGCCTTCGAT 16961113 Query 148125 GCTGTCGTTTTTGACGCCAAGCAAAAAACACGAACACATTTGCGGAATCCG---CGTTCC 148181 |||||||| || | | | |||| || || ||| || || ||| ||||| Sbjct 16961114 GCTGTCGTCCTTCATGGCCAGCAGGAAGCAGCTGGACAGCTGGGG---CCGGTTGGTTCC 16961170 Query 148182 CGCCGAGAAAAGGGTGGGACTCGCGTGCGTAAACAATTTTTGACTCATCATGCGATACGT 148241 || ||| || ||||| |||||| || ||| | || | || || | || || Sbjct 16961171 TGCGTTGAAGAGCGTGGGTGACGCGTGGGTGAACCACTTCTCTGACAGCAGGTTGTAGGT 16961230 Query 148242 CTCAATAGCGTCTTCGATGTCGTCGCCGTGAATGCCCAGCGCGACGCGCATGAGCATGTG 148301 | || ||| | ||||| || | ||| || || | | || |||||||||||||| Sbjct 16961231 ATTGATGGCGGCGTCGATATCATTCTTGTGGATACCAACAGACACCCGCATGAGCATGTG 16961290 Query 148302 CTGTGGTCGTTCGGCAACTTGATTGTTGATCTTGAGAAGATATCCATTTTCGAGGGTTTT 148361 ||| || || || || |||| ||||||||| || || || | || || || || Sbjct 16961291 CTGGGGACGCTCTGCCACTTTGCCGTTGATCTTCAGCAGGTAGGACCTCTCCAGAGTCTT 16961350 Query 148362 GTAACCAAAGTACTTGTAATCAAAATCTAGCTCGTAAGCGATGGCCG 148408 | | |||||| | ||||| || ||| |||||| |||||||| Sbjct 16961351 GAAGCCAAAGAAGTTGTAGGAGAAGTCTCTGTCGTAAATGATGGCCG 16961397 >seq19 Length=17744385 Score = 109 bits (120), Expect = 5e-19 Identities = 153/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968 |||| ||| | ||||| | ||||| || || |||||||||||| | || || | Sbjct 2910135 CGCAGAACGAGATGTAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGAGTGCGACCA 2910194 Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028 || || |||||||| || | | |||| |||||||| || |||||||| |||||||||||| Sbjct 2910195 TCCTCTAGCTGTTTGCCAGCAAAGATGAGACGCTGCTGGTCTGGAGGAATGCCTTCTTTA 2910254 Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088 || ||||| ||| | | ||| | || || | |||||| | || | || | Sbjct 2910255 TCCTGGATTTTAGCTTTGATATTTTCAATTGTGTCACTAGGCTCCGCCTCCAGAGTGATA 2910314 Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || || |||||||| ||||| | || |||||||| Sbjct 2910315 GTCTTGCCAGTCAGGGTTTTGACAAAGATCTGCAT 2910349 Score = 84.2 bits (92), Expect = 2e-11 Identities = 135/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 ||||| || || ||||||||||| | ||| || | |||| | ||| ||||| | | Sbjct 2910384 GACTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGACCACCTTCCAACTGCTTACCAGCA 2910443 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| |||||||| || ||||| || || ||||||||||| ||||| || | Sbjct 2910444 AAGATGAGACGCTGCTGGTCTGGGGGGATCCCTTCTTTATCCTGGATTTTGGCCTTAATG 2910503 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | ||||| | || ||||| || | || | ||||| ||||| || || || Sbjct 2910504 TTCTCTATGGTATCACTTGGTTCCACCTCCAGGGTGATTGTTTTGCCAGTTAGCGTCTTC 2910563 Query 132110 ATGAAAATCTGCAT 132123 | ||| |||||||| Sbjct 2910564 ACGAAGATCTGCAT 2910577 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968 |||| || | ||| | | | || ||||| || ||||||||||| | ||| || | Sbjct 3993687 CGCAGGACAAGATGGAGGGTGGATTCTTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCA 3993628 Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028 ||||| |||||||| || | | |||| || | ||| ||||| || || |||||||| || Sbjct 3993627 TCTTCCAGCTGTTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGGGAATGCCTTCCTTG 3993568 Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088 || ||||| |||| | || | || || | ||||| || || | || | Sbjct 3993567 TCCTGGATTTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCAACCTCAAGGGTAATG 3993508 Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATG 132124 || || ||||| || ||||| | ||| ||||||||| Sbjct 3993507 GTCTTGCCAGTGAGGGTTTTGACGAAGATCTGCATG 3993472 Score = 84.2 bits (92), Expect = 2e-11 Identities = 140/202 (69%), Gaps = 4/202 (2%) Strand=Plus/Minus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 || |||||||| |||||||||||| || ||||| |||||| ||||| || || | | Sbjct 3998943 GATTCTTTTTGGATGTTGTAGTCGGACAGAGTACGACCATCTTCCAGCTGCTTTCCAGCA 3998884 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| || | ||| ||||| || || |||||||| || || ||||| || | Sbjct 3998883 AAGATCAGCCTCTGCTGATCAGGGGGAATGCCTTCCTTGTCCTGGATTTTAGCCTTTACA 3998824 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACC----AGTCAGAGT 132105 | ||| | || || | ||||| ||||| | || | || || || ||| || || Sbjct 3998823 TTTTCAATGGTGTCACTGGGCTCTACTTCAAGGGTAATGGTCTTGCCAGTGAGTGAGGGT 3998764 Query 132106 TTTTATGAAAATCTGCATGACT 132127 || | ||||||||||||||| Sbjct 3998763 CTTCACAAAAATCTGCATGACT 3998742 >seq14 Length=28847931 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 131914 AACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTC 131973 ||| | ||| | | | ||||| || || ||||||||||| | ||| || |||||| Sbjct 12556716 AACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAAAGGGTGCGGCCATCTTC 12556775 Query 131974 GAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGT 132033 | ||||||||| | | |||| |||||||| || ||||| || || ||||||||||| Sbjct 12556776 CAACTGTTTACCAGCAAAGATCAGACGCTGCTGGTCTGGGGGGATACCTTCTTTATCCTG 12556835 Query 132034 AATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTT 132093 || || || | | ||| | ||||| | ||||||||||| | || | || || Sbjct 12556836 GATCTTGGCCTTGACATTTTCAATGGTATCACTGGGCTCCACTTCCAGAGTGATGGTCTT 12556895 Query 132094 ACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 |||||||| || || | || || ||||| Sbjct 12556896 GCCAGTCAGGGTCTTCACAAAGATTTGCAT 12556925 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476434597677480