Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cynoglossus_20semilaevis_20[refseq_20GCF_5F000523025.1_202014-01-28] 29,643 sequences; 470,199,494 total letters Query= NC_026141.2 Length=4988 Score E Sequences producing significant alignments: (Bits) Value seq15 98.7 3e-17 seq11 98.7 3e-17 seq10 98.7 3e-17 seq1 98.7 3e-17 seq9521 95.1 4e-16 seq45 89.7 2e-14 >seq15 Length=20091810 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 8733744 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 8733803 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 8733804 CCGGGTTTCGGC 8733815 >seq11 Length=20528231 Score = 98.7 bits (108), Expect = 3e-17 Identities = 66/74 (89%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 2767 TGGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAA 2826 |||| ||| |||||||||||||||||| | ||||||||||||| |||||||||||||||| Sbjct 4388601 TGGCCGAAATAGCTCAGTTGGGAGAGCGTCAGACTGAAGATCTGAAGGTCCCTGGTTCAA 4388660 Query 2827 CCCCGGGCTTCAGC 2840 |||||| ||| || Sbjct 4388661 TCCCGGGTTTCGGC 4388674 Score = 95.1 bits (104), Expect = 4e-16 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| | ||||||||||||| |||||||||||||||| | Sbjct 3018860 GCCGAAATAGCTCAGTTGGGAGAGCGTCAGACTGAAGATCTGAAGGTCCCTGGTTCAATC 3018801 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 3018800 CCGGGTTTCGGC 3018789 Score = 95.1 bits (104), Expect = 4e-16 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| | ||||||||||||| |||||||||||||||| | Sbjct 6388802 GCCGAAATAGCTCAGTTGGGAGAGCGTCAGACTGAAGATCTGAAGGTCCCTGGTTCAATC 6388743 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 6388742 CCGGGTTTCGGC 6388731 Score = 95.1 bits (104), Expect = 4e-16 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| | ||||||||||||| |||||||||||||||| | Sbjct 7513409 GCCGAAATAGCTCAGTTGGGAGAGCGTCAGACTGAAGATCTGAAGGTCCCTGGTTCAATC 7513468 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 7513469 CCGGGTTTCGGC 7513480 Score = 95.1 bits (104), Expect = 4e-16 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| | ||||||||||||| |||||||||||||||| | Sbjct 7534433 GCCGAAATAGCTCAGTTGGGAGAGCGTCAGACTGAAGATCTGAAGGTCCCTGGTTCAATC 7534492 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 7534493 CCGGGTTTCGGC 7534504 Score = 95.1 bits (104), Expect = 4e-16 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| | ||||||||||||| |||||||||||||||| | Sbjct 7534803 GCCGAAATAGCTCAGTTGGGAGAGCGTCAGACTGAAGATCTGAAGGTCCCTGGTTCAATC 7534862 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 7534863 CCGGGTTTCGGC 7534874 Score = 95.1 bits (104), Expect = 4e-16 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| | ||||||||||||| |||||||||||||||| | Sbjct 19812428 GCCGAAATAGCTCAGTTGGGAGAGCGTCAGACTGAAGATCTGAAGGTCCCTGGTTCAATC 19812487 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 19812488 CCGGGTTTCGGC 19812499 Score = 86.0 bits (94), Expect = 2e-13 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| | ||| ||||||||| |||||||||||||||| | Sbjct 19812831 GCCGAAATAGCTCAGTTGGGAGAGCGTCAGATTGAAGATCTGAAGGTCCCTGGTTCAATC 19812890 Query 2829 CCGGGCTTCAGC 2840 ||| | ||| || Sbjct 19812891 CCGTGTTTCGGC 19812902 Score = 80.6 bits (88), Expect = 8e-12 Identities = 61/72 (85%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| ||| |||||||||||||| | ||| ||||||||| |||||||||||||||| | Sbjct 19813400 GCCGAAATAGTTCAGTTGGGAGAGCGTCAGATTGAAGATCTGAAGGTCCCTGGTTCAATC 19813459 Query 2829 CCGGGCTTCAGC 2840 ||| | ||| || Sbjct 19813460 CCGTGTTTCGGC 19813471 >seq10 Length=21015401 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 2296518 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 2296577 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 2296578 CCGGGTTTCGGC 2296589 >seq1 Length=34528841 Score = 98.7 bits (108), Expect = 3e-17 Identities = 66/74 (89%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 2767 TGGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAA 2826 |||| ||| |||||||||||||||||| | ||||||||||||| |||||||||||||||| Sbjct 4085370 TGGCCGAAATAGCTCAGTTGGGAGAGCGTCAGACTGAAGATCTGAAGGTCCCTGGTTCAA 4085311 Query 2827 CCCCGGGCTTCAGC 2840 |||||| ||| || Sbjct 4085310 TCCCGGGTTTCGGC 4085297 Score = 96.9 bits (106), Expect = 1e-16 Identities = 65/73 (89%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 2768 GGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAAC 2827 ||| ||| |||||||||||||||||| | ||||||||||||| |||||||||||||||| Sbjct 2651678 GGCCGAAATAGCTCAGTTGGGAGAGCGTCAGACTGAAGATCTGAAGGTCCCTGGTTCAAT 2651737 Query 2828 CCCGGGCTTCAGC 2840 |||||| ||| || Sbjct 2651738 CCCGGGTTTCGGC 2651750 Score = 96.9 bits (106), Expect = 1e-16 Identities = 65/73 (89%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 2768 GGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAAC 2827 ||| ||| |||||||||||||||||| | ||||||||||||| |||||||||||||||| Sbjct 3276611 GGCCGAAATAGCTCAGTTGGGAGAGCGTCAGACTGAAGATCTGAAGGTCCCTGGTTCAAT 3276670 Query 2828 CCCGGGCTTCAGC 2840 |||||| ||| || Sbjct 3276671 CCCGGGTTTCGGC 3276683 Score = 95.1 bits (104), Expect = 4e-16 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| | ||||||||||||| |||||||||||||||| | Sbjct 3279083 GCCGAAATAGCTCAGTTGGGAGAGCGTCAGACTGAAGATCTGAAGGTCCCTGGTTCAATC 3279142 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 3279143 CCGGGTTTCGGC 3279154 Score = 95.1 bits (104), Expect = 4e-16 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| | ||||||||||||| |||||||||||||||| | Sbjct 3280079 GCCGAAATAGCTCAGTTGGGAGAGCGTCAGACTGAAGATCTGAAGGTCCCTGGTTCAATC 3280020 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 3280019 CCGGGTTTCGGC 3280008 Score = 95.1 bits (104), Expect = 4e-16 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| | ||||||||||||| |||||||||||||||| | Sbjct 3291859 GCCGAAATAGCTCAGTTGGGAGAGCGTCAGACTGAAGATCTGAAGGTCCCTGGTTCAATC 3291800 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 3291799 CCGGGTTTCGGC 3291788 Score = 95.1 bits (104), Expect = 4e-16 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| | ||||||||||||| |||||||||||||||| | Sbjct 18932087 GCCGAAATAGCTCAGTTGGGAGAGCGTCAGACTGAAGATCTGAAGGTCCCTGGTTCAATC 18932146 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 18932147 CCGGGTTTCGGC 18932158 Score = 95.1 bits (104), Expect = 4e-16 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| | ||||||||||||| |||||||||||||||| | Sbjct 18933471 GCCGAAATAGCTCAGTTGGGAGAGCGTCAGACTGAAGATCTGAAGGTCCCTGGTTCAATC 18933412 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 18933411 CCGGGTTTCGGC 18933400 Score = 89.7 bits (98), Expect = 2e-14 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| | |||||||||||| |||||||||||||||| | Sbjct 3279872 GCCGAAATAGCTCAGTTGGGAGAGCGTCAGACTGAAGATCCGAAGGTCCCTGGTTCAATC 3279813 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 3279812 CCGGGTTTCGGC 3279801 >seq9521 Length=472 Score = 95.1 bits (104), Expect = 4e-16 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| | ||||||||||||| |||||||||||||||| | Sbjct 257 GCCGAAATAGCTCAGTTGGGAGAGCGTCAGACTGAAGATCTGAAGGTCCCTGGTTCAATC 198 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 197 CCGGGTTTCGGC 186 >seq45 Length=142297 Score = 89.7 bits (98), Expect = 2e-14 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| | |||||||||| || || ||||||||||||||| Sbjct 1552 GCCGAAATAGCTCAGTTGGGAGAGCGTCAGACTGAAGACCTGAATGTCCCTGGTTCAACC 1611 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 1612 CCGGGTTTCGGC 1623 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 15844461237735