Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cynoglossus_20semilaevis_20[refseq_20GCF_5F000523025.1_202014-01-28] 29,643 sequences; 470,199,494 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq19 127 2e-24 seq14 91.5 1e-13 >seq19 Length=17744385 Score = 127 bits (140), Expect = 2e-24 Identities = 154/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 35527 CACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTC 35586 ||| | |||||| || |||||| || |||||||| |||| || || || | || || Sbjct 2912630 CACGAGATGTAAAGTGGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGGCCATCTTC 2912689 Query 35587 CAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCAT 35646 || ||||||||| ||||| || | | ||||||||| | || | | |||||||||| Sbjct 2912690 CAACTGCTTACCAGCAAAGATGAGTCTCTGCTGGTCTGGTGGGATTCCCTCCTTGTCCTG 2912749 Query 35647 GATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTT 35706 |||||| ||| | | | | | |||||| || | || ||||||| ||||| ||||| Sbjct 2912750 GATCTTGGACTTTATATTCTCTATCGTGTCACTGGGCTCAACCTCCAGGGTGATGGTTTT 2912809 Query 35707 ACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 || |||| ||||||||||| |||||||| Sbjct 2912810 GCCAGTCAGGGTTTTCACAAACATCTGCAT 2912839 Score = 107 bits (118), Expect = 2e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 35527 CACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTC 35586 ||| | ||||| || |||||| || |||||||| || | | || || | || || Sbjct 2912402 CACAAGATGTAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGAGTGCGACCATCCTC 2912461 Query 35587 CAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCAT 35646 ||||||||| || ||||| || | ||||||||||| | || | || ||| |||||| Sbjct 2912462 CAGCTGCTTTCCAGCAAAGATGAGACGCTGCTGGTCTGGTGGGATGCCCTCTTTGTCCTG 2912521 Query 35647 GATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTT 35706 |||||| |||| | | | |||||||| | ||| || |||| ||||| || || Sbjct 2912522 GATCTTGGCTTTCACGTTCTCAATGGTGTCGCTGGGTTCAACTTCCAAGGTGATGGTCTT 2912581 Query 35707 ACCCGTCAAAGTTTTCACAAATATCTGCATTC 35738 || |||| ||||||||||| | |||||||| Sbjct 2912582 GCCAGTCAGGGTTTTCACAAACACCTGCATTC 2912613 Score = 98.7 bits (108), Expect = 9e-16 Identities = 139/193 (72%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || |||||||| |||| | || || | || || ||||| || || ||||| Sbjct 2910158 CTCCTTCTGGATGTTGTAGTCGGAGAGAGTGCGACCATCCTCTAGCTGTTTGCCAGCAAA 2910217 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGC-TTCAGAG 35663 || | ||||||||||| | ||||| || || || ||| ||| ||| || || | | Sbjct 2910218 GATGAGACGCTGCTGGTCTGGAGGAATGCCTTCTTTATCCTGGAT-TTTAGCTTTGATAT 2910276 Query 35664 TTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCA 35723 || | | ||||| || | ||| |||||| ||||| || || || |||| ||||| | Sbjct 2910277 TTTCAATTGTGTCACTAGGCTCCGCCTCCAGAGTGATAGTCTTGCCAGTCAGGGTTTTGA 2910336 Query 35724 CAAATATCTGCAT 35736 |||| |||||||| Sbjct 2910337 CAAAGATCTGCAT 2910349 Score = 98.7 bits (108), Expect = 9e-16 Identities = 137/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 ||| || || |||||||| || | | ||| || | || ||||||||||| || ||||| Sbjct 3999169 CTCTTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAA 3999110 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 |||| || |||||| || | |||| || |||||||||| ||||||| ||| | | | Sbjct 3999109 GATCAGCCTCTGCTGATCAGGGGGAATGCCCTCCTTGTCCTGGATCTTTGCCTTTACATT 3999050 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | ||||| || | || || || | || || || || || || | ||||| || Sbjct 3999049 CTCAATGGTGTCACTGGGCTCTACTTCAAGGGTAATGGTCTTGCCAGTGAGGGTTTTGAC 3998990 Query 35725 AAATATCTGCAT 35736 ||| |||||||| Sbjct 3998989 AAAGATCTGCAT 3998978 Score = 86.0 bits (94), Expect = 6e-12 Identities = 144/208 (69%), Gaps = 4/208 (2%) Strand=Plus/Minus Query 35533 ATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTG 35592 ||| | |||| || ||||| |||||||| |||| || || || | || |||||||| Sbjct 3998953 ATGAAGCGTAGATTCTTTTTGGATGTTGTAGTCGGACAGAGTACGACCATCTTCCAGCTG 3998894 Query 35593 CTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTT 35652 ||| || ||||| |||| || |||||| || | |||| || ||||||||| ||| || Sbjct 3998893 CTTTCCAGCAAAGATCAGCCTCTGCTGATCAGGGGGAATGCCTTCCTTGTCCTGGATTTT 3998834 Query 35653 TTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACC--- 35709 ||| | | || | | ||||| || | || || || | || || || || || Sbjct 3998833 AGCCTTTACATTTTCAATGGTGTCACTGGGCTCTACTTCAAGGGTAATGGTCTTGCCAGT 3998774 Query 35710 -CGTCAAAGTTTTCACAAATATCTGCAT 35736 || | || |||||||| |||||||| Sbjct 3998773 GAGTGAGGGTCTTCACAAAAATCTGCAT 3998746 Score = 84.2 bits (92), Expect = 2e-11 Identities = 136/193 (70%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || |||||||| || | | ||| || | | |||| ||||||||| ||||| Sbjct 2910386 CTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGACCACCTTCCAACTGCTTACCAGCAAA 2910445 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 || | ||||||||||| | || | | || || ||| ||| ||| || | | || Sbjct 2910446 GATGAGACGCTGCTGGTCTGGGGGGATCCCTTCTTTATCCTGGAT-TTTGGCCTTAATGT 2910504 Query 35665 T-GCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCA 35723 | | | || || || | ||||||||||| ||||| ||||| || || | || |||| Sbjct 2910505 TCTCTATGGTATCACTTGGTTCCACCTCCAGGGTGATTGTTTTGCCAGTTAGCGTCTTCA 2910564 Query 35724 CAAATATCTGCAT 35736 | || |||||||| Sbjct 2910565 CGAAGATCTGCAT 2910577 >seq14 Length=28847931 Score = 91.5 bits (100), Expect = 1e-13 Identities = 136/193 (70%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || |||||||| || | | ||| || | || |||| ||| ||||| ||||| Sbjct 12556734 CTCCTTCTGGATGTTGTAGTCAGAAAGGGTGCGGCCATCTTCCAACTGTTTACCAGCAAA 12556793 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 |||| ||||||||||| | || | | || || ||| |||||| ||| | | | Sbjct 12556794 GATCAGACGCTGCTGGTCTGGGGGGATACCTTCTTTATCCTGGATCTTGGCCTTGACATT 12556853 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | | || || || | ||||| |||| ||||| || || || |||| || ||||| Sbjct 12556854 TTCAATGGTATCACTGGGCTCCACTTCCAGAGTGATGGTCTTGCCAGTCAGGGTCTTCAC 12556913 Query 35725 AAATATCTGCATT 35737 ||| || |||||| Sbjct 12556914 AAAGATTTGCATT 12556926 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450626564066440