Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cynoglossus_20semilaevis_20[refseq_20GCF_5F000523025.1_202014-01-28] 29,643 sequences; 470,199,494 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq4 480 1e-130 seq19 102 1e-16 seq18 96.9 5e-15 >seq4 Length=20010643 Score = 480 bits (532), Expect = 1e-130 Identities = 1278/1944 (66%), Gaps = 19/1944 (1%) Strand=Plus/Plus Query 68652 ATTCTTGATCTCATCATTCCACAATTTTCTCTCCGTTAAAACTCTAAGGAGATGCGGATT 68711 |||||| || || || |||||| | ||||||||| | || | || ||||| || || Sbjct 16959824 ATTCTTCATTTCCTCGCTCCACAGTCCTCTCTCCGTCAGGTCTTTGAGCAGATGAGGGTT 16959883 Query 68712 AACTATTTGAAATTCCCCAGATAACACTCTACGAGTGTAAATATTACTGGTATATGGTTC 68771 || || || || || ||||| | ||||| || ||||| || || ||||| || || || Sbjct 16959884 CACGATCTGGAACTCTCCAGACAGAACTCTGCGGGTGTAGATGTTGCTGGTGTAGGGCTC 16959943 Query 68772 CACAGATTCATTATTTCCCAGAATTTGAGCAGTTGATGCAGTTGGCATAGGTGCCACCAA 68831 | || || || || ||||| || || || || || || || ||||| || |||| || Sbjct 16959944 GATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAGGCTGTGGGCATGGGGGCCATCAG 16960003 Query 68832 TAAACTATTTCTAAGACCATGTGTTATGATTTTATCTTTTAGATGTTTCCAATCCCAAAG 68891 | ||| || || | |||||| | ||| || || || || | ||| ||||| || Sbjct 16960004 CAGACTGTTCCTGACTCCATGTTTGGAGATCTTCTCCTTCAGCAGGGCCCAGTCCCACAG 16960063 Query 68892 ATCAGATGGTACAACATTCCAAAGATCGTATTGTAGAATTCCGTTACTTGCATATGATCC 68951 || | || | ||| | ||||| || || || || || || | || || Sbjct 16960064 GTCTGTGGGCGTCTTCTCCCACATGTCGTACTGAAGGATGCCCTTGCTGACTGGAGACCC 16960123 Query 68952 ATTATATGTTTCATAAGGTCCTTCCTGTTCAGCTAGTTCACAACTTGCCTCTAATGCACC 69011 | || || ||||| || || || | |||| || || || || ||||||| || | Sbjct 16960124 TTCGTACGTCTCATAGGGGCCCAACTCTGCAGCCAGCTCGCAGCTGGCCTCTAGGGCGGC 16960183 Query 69012 GTAATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGACTATCGAATGG 69071 ||| || || || ||||| || | | ||||| || ||||| | || || || || Sbjct 16960184 GTAGTAGATGGTCTCGAAGATTTGGATGTTGAGCAGCTGAGCTTCAGGGCTTTCAAAAGG 16960243 Query 69072 ATAATGTAAAAGAATAAATGCATCTGCCAATCCCTGAACCCCAATACCGATAGGTCTATG 69131 || | | || || || || ||||||| ||||| || ||||| || || || || || Sbjct 16960244 GAAACGCATCAGGATGAAGGCGTCTGCCAGACCCTGGACACCAATTCCTATTGGCCTGTG 16960303 Query 69132 TCTCTTATTTGAACTTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATT 69191 | ||| || || ||||||| || || | |||||| || || || ||||| || || || Sbjct 16960304 GCGCTTGTTGGAGTTTTCAGCCTCGGGCACAGGATAGTAGTTGATGTCTATGATCTTGTT 16960363 Query 69192 AAGATTTCGGACTACTACTTTAACCACGTCCTTTAGTTTGAGAAAATCAAATCGTCCA-T 69250 ||||||| ||| | || || ||| | | |||||| || ||| | |||| | Sbjct 16960364 CAGATTTCTGACGATCACCTTGGTCACCTGTGTCAGTTTGTTGAAGTCATAA-GTCCGCT 16960422 Query 69251 CTA---TAACAAACATATTCAGTGCTACAGATGCTAGATTACAAACTGCTACCTCATTAG 69307 || | || |||| || || || | || || ||||||||||| || ||||| | | Sbjct 16960423 CTGGGGTGACGTACATGTTGAGAGCGATGGACGCCAGATTACAAACGGCCACCTCGTCTG 16960482 Query 69308 AATTTGCATATTGTATTATCTCTGTACATAGATTACTACATTTGATAGTCCCCAGATTTT 69367 | | || | | || ||||| || || || || || ||||| || ||||| || | Sbjct 16960483 TGCTGGTGTACTCCACGATTTCTGTGCACAGGTTGCTGCACTTGATGGTGCCCAGGTTCT 16960542 Query 69368 GCTGATTACTCTTTTTGTTACAGGCGTCCTTGTAAAGAATAAACGGAGTACCAGTTTCAA 69427 |||| || ||||| |||| |||||||| ||||| || || | || ||||| ||||| Sbjct 16960543 GCTGGTTGCTCTTCCTGTTGCAGGCGTCTTTGTAGAGCATGTAGGGCGTACCGGTTTCTG 16960602 Query 69428 TCTGAGATTCGATAATAGATTTCCAAACGACCCTAGCATTTATTACGGTCTTGTAACGCT 69487 |||| || || || || | | ||| | ||| || | ||| || | || || Sbjct 16960603 TCTGCGACTCAATTATGGCGTGCCACAGCTGTTGAGCCTTCACCACGCGCT--TCACCCT 16960660 Query 69488 TC--TCTTTTTCATATTGTGTATATAGCCGTTCGAATTCATCTCCCCAAACATCATCCAA 69545 | || || ||||| || || ||| ||||| | || ||||| || |||| Sbjct 16960661 CCCTTCCTTCTCATACCTAGTGTAGAGCTCCTCGAACTTCTCCCCCCAGCACTCGTCCAG 16960720 Query 69546 TCCAGGACATTCATTTGGACACATCAATGACCACACATCATCATCCTT--AACTCGTTTC 69603 || ||||| ||| | |||||||| | |||||| | | | | ||| || | ||| Sbjct 16960721 ACCGGGACACTCACTGGGACACATGAGTGACCAGTCCTGGT--TGCTTTCCACCCTCTTC 16960778 Query 69604 ATAAATAGATCGGGAATCCAAAGAGCTATAAAGAGATCTCTGGTTCTATTTTCTTCATTT 69663 || || || || || ||||| | || |||||||||| | ||| | || || || Sbjct 16960779 ATGAACAGGTCAGGGATCCACATGGCGTAGAAGAGATCTCGCGCTCTCTGCTCCTCCTTC 16960838 Query 69664 CCTGTAttttttttAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATAT 69723 ||||| || || |||||||| || || || | | ||| ||||||| || || | || Sbjct 16960839 CCTGTGTTCTTCTTAAGATCCAGGAAGTCAAAGACGTCATAATGCCAGGGCTCCAAGTAA 16960898 Query 69724 ATCGCCATGACTCCCGGTCGTTTATTTCCTCCCTGATCTATGTATCTGGCAGTGTTATTA 69783 || || | | |||| || || || || || |||||||| | ||| | || ||||| ||| Sbjct 16960899 ATGGCAAAGGCTCCAGGACGCTTGTTGCCACCCTGATCCACGTAGCGCGCTGTGTTGTTA 16960958 Query 69784 TAGACTCTCAGCATCGGAATAATACCATTAGATTTACCATTTGTTCCAGAAATATAACTT 69843 || ||||||||||| || | | || || || || || || || |||| || || || Sbjct 16960959 TACACTCTCAGCATGGGCACCAGGCCGTTTGAGTTTCCGTTGGTCCCAGCGATGTAGCTC 16961018 Query 69844 CCTCTTGCGCGAATATTACTAATAGATAGACCTATTCCTCCTGCCATTTTAGAGATTAGA 69903 || | | | || |||| | | ||| || || || ||| || ||||| || Sbjct 16961019 CCAGTGGATCTGATGCAGCTAACGGCCACACCGATGCCGCCGGCCGACTTGGAGATGAGG 16961078 Query 69904 GCACAACGTTTCAATGTGTCATATATACCCTCTATGCTATCATCTATCATGTTAAGAAGA 69963 || || |||| |||||||| || || || ||||| || || ||||| || || Sbjct 16961079 GCGCAGTTCTTCAGCGTGTCATAGATGCCTTCGATGCTGTCGTCCTTCATGGCCAGCAGG 16961138 Query 69964 AAACAGCTAGACATTTGATGATGTATAGTTCCCGCATTAAATAATGTAGGAGATGCGTGA 70023 || ||||| |||| || | | | ||||| || || || | || || || ||||| Sbjct 16961139 AAGCAGCTGGACAGCTGGGGCCGGTTGGTTCCTGCGTTGAAGAGCGTGGGTGACGCGTGG 16961198 Query 70024 GTGAACCATTTTTCAGAAAGCAGATTGTATGTTTCAATAGCTGATTCTATATCCCACTGA 70083 |||||||| || || || ||||| ||||| || | || || | || ||||| || Sbjct 16961199 GTGAACCACTTCTCTGACAGCAGGTTGTAGGTATTGATGGCGGCGTCGATATCATTCTTG 16961258 Query 70084 TGAATTCCTATCGCGACACGCATCAACATATGCTGAGGTCGTTCTACCGTTTTATTATTT 70143 || || || | | || ||||| | ||| ||||| || || ||| || ||| || Sbjct 16961259 TGGATACCAACAGACACCCGCATGAGCATGTGCTGGGGACGCTCTGCCACTTTGCCGTTG 16961318 Query 70144 ATTTTCAACAGGTATGATTTTTCCAGAGTTTTAAACCCAAAATAGTTGTATGAAAAGTCT 70203 || |||| |||||| || | |||||||| || || ||||| ||||||| || |||||| Sbjct 16961319 ATCTTCAGCAGGTAGGACCTCTCCAGAGTCTTGAAGCCAAAGAAGTTGTAGGAGAAGTCT 16961378 Query 70204 CTTTCGTAAATAATAACAGAATTTAGTTTATCCTTATATTTGGTAACTATATCCATAACA 70263 || |||||||| || | || || || || || | | || ||| |||| | Sbjct 16961379 CTGTCGTAAATGATGGCCGAGTTCAGGCGGTCTTTGTTCTCCAGAATTATGTCCAGAGTC 16961438 Query 70264 GTAGGTGAGATAATCGGAGA---TCGTTTACCATTTTTAGGATTAACATAGTTGAATAAA 70320 ||||| || || || ||||| || || || ||||||||| | | Sbjct 16961439 TCCTTGGAGATCATGGGGGAGTGACGTTT---GTTCAGGGGGTTGACATAGTTGTACAGG 16961495 Query 70321 TCTTCCATTACATCACTAAATAGtttttttGTTTCCTTGTGTAAATTTGATATGGCTATT 70380 |||||||| || ||| | || | || || || |||||||| | || || | || || Sbjct 16961496 TCTTCCATCACTTCATTGAACACCTTCTTGGTCTCCTTGTGCAGGTTGGAGACAGCGATG 16961555 Query 70381 CTGGCTGCTAGAATAGCATAGTCAGGATGTTGTGTAGTACAAGTAGCTGCTATTTCCGCA 70440 | || || || || |||||||| || |||| || || || || | || || || Sbjct 16961556 CGTGCAGCCAGGATGGCATAGTCGGGGTGTTTGGTTGTGAGGGTGGCAGTGATCTCTGCG 16961615 Query 70441 GCTAACGTATCTAATTCTATAGTTGTAACTCCGTTATATAGCCCTTGAATAACTTTCATG 70500 || | || || | || | || || ||||| || || || || || || || |||||| Sbjct 16961616 GCCAGTGTGTCCAGCTCAACTGTGGTCACTCCATTGTACAGACCCTGGATCACCTTCATG 16961675 Query 70501 GCTATTTTGATAGGATCTATGAATTCTGTGTTCAGACCATAACATAATTTTCTAATACGA 70560 | || | | ||||| | ||| || | |||||| ||||| || | || |||||| Sbjct 16961676 GTGATCTGGGCCGGATCCACGAAGTCAGAGTTCAGGCCATAGCAGAGCTTCTGGATACGA 16961735 Query 70561 GATGTAATTTTATCAAACATAACA 70584 || || ||||| |||||||| ||| Sbjct 16961736 GAGGTGATTTTGTCAAACATGACA 16961759 >seq19 Length=17744385 Score = 102 bits (112), Expect = 1e-16 Identities = 92/116 (79%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 69325 ATCTCTGTACATAGATTACTACATTTGATAGTCCCCAGATTTTGCTGATTACTCTTTTTG 69384 |||||||| || || |||||||||||||| || ||||| || ||||| || ||||| || Sbjct 13834222 ATCTCTGTGCACAGGTTACTACATTTGATGGTTCCCAGGTTCTGCTGGTTGCTCTTCCTG 13834163 Query 69385 TTACAGGCGTCCTTGTAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCGAT 69440 || |||||||||||||| || || | ||||| || ||||| |||| || || || Sbjct 13834162 TTGCAGGCGTCCTTGTAGAGCATGTAGGGAGTTCCTGTTTCTGTCTGTGACTCAAT 13834107 >seq18 Length=15207555 Score = 96.9 bits (106), Expect = 5e-15 Identities = 103/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 39639 CCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTT 39698 |||||||||| || || | || ||||| | || || ||||||||||| || | ||| | Sbjct 10925818 CCTCATCTCTGCTGATCAGCTCATTAGAGTAGGTAAGCCCAGGCATTAGGCCTCTCTTCT 10925759 Query 39699 TGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATG 39758 ||||||| | |||||||| || || ||||| || ||||| || || || || ||||| | Sbjct 10925758 TGAGCCAGTAGATGGCAGCGAATGAACCAGAGAAAAAGATTCCCTCCACAGCAGCAAAGG 10925699 Query 39759 CAACAAGTCTCTCTCC 39774 | |||| || ||| || Sbjct 10925698 CCACAATTCGCTCACC 10925683 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686654274530520