Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cynoglossus_20semilaevis_20[refseq_20GCF_5F000523025.1_202014-01-28] 29,643 sequences; 470,199,494 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq4 129 5e-25 seq14 104 2e-17 seq19 100 2e-16 >seq4 Length=20010643 Score = 129 bits (142), Expect = 5e-25 Identities = 272/405 (67%), Gaps = 3/405 (1%) Strand=Plus/Plus Query 131593 GTCCAAATTGGGACATTCGCTGGGACACATTAGCGACCACACGCCGTTCTGTTCAACTCG 131652 ||||| | |||||| || ||||||||||| || ||||| | ||| ||| || | Sbjct 16960715 GTCCAGACCGGGACACTCACTGGGACACATGAGTGACCAGTCCTGGTTGCTTTCCACCCT 16960774 Query 131653 CTTCATAAACAAATCCGGCACCCATAACGCGTACAACAGATCTCTAGCTTTTTTCTCTTC 131712 |||||| |||| || || | ||| | ||||| || ||||||| ||| | | ||| || Sbjct 16960775 CTTCATGAACAGGTCAGGGATCCACATGGCGTAGAAGAGATCTCGCGCTCTCTGCTCCTC 16960834 Query 131713 TGTACCCATAAtttttttCAAATTTAAAAAGTCCAAAATGTCCGCATGCCAGGGTTCCAA 131772 | || | | || || | || | ||||| || | ||| ||||||||| ||||| Sbjct 16960835 CTTCCCTGTGTTCTTCTTAAGATCCAGGAAGTCAAAGACGTCATAATGCCAGGGCTCCAA 16960894 Query 131773 ATACACTGCCATTGCGCCTTTGCGC---TTACCGCCTTGATTAACATGACGAACCATGTT 131829 || | || | || || ||| || || || |||| || | || | |||| Sbjct 16960895 GTAAATGGCAAAGGCTCCAGGACGCTTGTTGCCACCCTGATCCACGTAGCGCGCTGTGTT 16960954 Query 131830 GTTGTATACGCGCAACATGGGCTCCAAACCGTTGGCGTTTCCATTGGTGCTCTTAATGTA 131889 ||| || || | || ||||||| ||| ||||| | |||||| ||||| | ||||| Sbjct 16960955 GTTATACACTCTCAGCATGGGCACCAGGCCGTTTGAGTTTCCGTTGGTCCCAGCGATGTA 16961014 Query 131890 GCTGCCATTGGCTCTGATTTTGTGAACGTTGAGTCCAATACCTCCGCCGTATTTAGAGAT 131949 ||| ||| ||| |||||| | |||| | || || || ||| | | || ||||| Sbjct 16961015 GCTCCCAGTGGATCTGATGCAGCTAACGGCCACACCGATGCCGCCGGCCGACTTGGAGAT 16961074 Query 131950 TAGTGCGCATTTGGTTAGAGTGTTATAGATACCTTCCACGCTGTC 131994 || ||||| || | || |||| |||||| ||||| | |||||| Sbjct 16961075 GAGGGCGCAGTTCTTCAGCGTGTCATAGATGCCTTCGATGCTGTC 16961119 >seq14 Length=28847931 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || || || || || |||||||| | | |||| | ||||| | ||||||||| Sbjct 12556729 GTGGACTCCTTCTGGATGTTGTAGTCAGAAAGGGTGCGGCCATCTTCCAACTGTTTACCA 12556788 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 || | || |||||||| || || || || | ||| |||||||| ||||||| || Sbjct 12556789 GCAAAGATCAGACGCTGCTGGTCTGGGGGGATACCTTCTTTATCCTGGATCTTGGCCTTG 12556848 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | |||| | || || ||| || ||||| ||||| || | ||||| ||||| || Sbjct 12556849 ACATTTTCAATGGTATCACTGGGCTCCACTTCCAGAGTGATGGTCTTGCCAGTCAGGGTC 12556908 Query 27231 TTCACAAAGATTTGCAT 27247 ||||||||||||||||| Sbjct 12556909 TTCACAAAGATTTGCAT 12556925 Score = 93.3 bits (102), Expect = 4e-14 Identities = 137/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 27054 GAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCG 27113 || || || || || |||||||| | | |||| | ||||| || || ||||| || Sbjct 12557416 GATTCCTTCTGGATGTTGTAGTCAGAAAGGGTGCGTCCATCTTCAAGTTGCTTACCAGCA 12557475 Query 27114 TAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTCAGG 27173 | || |||||||| ||||| || || | ||| ||||| || ||||||| || | Sbjct 12557476 AAGATCAGACGCTGCTGATCTGGGGGGATACCTTCTTTTTCCTGGATCTTGGCCTTGACA 12557535 Query 27174 GTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTC 27233 |||| | || || || || ||||| ||||| || | ||||| ||||| || ||| Sbjct 12557536 TTTTCAATGGTATCACGGGGCTCCACTTCCAGAGTGATGGCCTTGCCAGTCAGGGTCTTC 12557595 Query 27234 ACAAAGATTTGCAT 27247 |||||||||||||| Sbjct 12557596 ACAAAGATTTGCAT 12557609 >seq19 Length=17744385 Score = 100 bits (110), Expect = 2e-16 Identities = 162/232 (70%), Gaps = 1/232 (0%) Strand=Plus/Plus Query 27016 TATTGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGT 27075 |||| ||||| || | || | || | ||||| || || || || || || ||||||| Sbjct 2912381 TATT-CCTCCCCGAAGGCGAAGCACAAGATGTAGAGTGGACTCCTTCTGGATGTTGTAGT 2912439 Query 27076 CGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCG 27135 | | |||| | || || ||||| || || || | ||||||||||| || || | Sbjct 2912440 CAGAGAGAGTGCGACCATCCTCCAGCTGCTTTCCAGCAAAGATGAGACGCTGCTGGTCTG 2912499 Query 27136 GCGGCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTT 27195 | || | |||||||| || ||||||| ||||| | | || | ||||| ||| || Sbjct 2912500 GTGGGATGCCCTCTTTGTCCTGGATCTTGGCTTTCACGTTCTCAATGGTGTCGCTGGGTT 2912559 Query 27196 CAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 ||||||| | || || | ||||| ||||| ||||||||||| | ||||| Sbjct 2912560 CAACTTCCAAGGTGATGGTCTTGCCAGTCAGGGTTTTCACAAACACCTGCAT 2912611 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 ||||| | || || | || | |||||| || || || || || || ||||||||| | Sbjct 2912613 CCTCCTCTCAGACGGAGCACGAGATGTAAAGTGGACTCCTTCTGGATGTTGTAGTCGGAC 2912672 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | |||| | ||||| | ||| ||||| || | ||||| | ||| || || || || Sbjct 2912673 AGAGTGCGGCCATCTTCCAACTGCTTACCAGCAAAGATGAGTCTCTGCTGGTCTGGTGGG 2912732 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | ||||| || || ||||||| || | | |||| ||||| ||| ||||| Sbjct 2912733 ATTCCCTCCTTGTCCTGGATCTTGGACTTTATATTCTCTATCGTGTCACTGGGCTCAACC 2912792 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || || || || | |||||| ||||| ||||||||||| || ||||| Sbjct 2912793 TCCAGGGTGATGGTTTTGCCAGTCAGGGTTTTCACAAACATCTGCAT 2912839 Score = 91.5 bits (100), Expect = 1e-13 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 27033 CGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCG 27092 |||| || | ||||| || || || || || || ||||||||| | |||| | Sbjct 2910135 CGCAGAACGAGATGTAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGAGTGCGACCA 2910194 Query 27093 TCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTA 27152 || || |||||||| || || | ||||||||||| || || || || | || |||||| Sbjct 2910195 TCCTCTAGCTGTTTGCCAGCAAAGATGAGACGCTGCTGGTCTGGAGGAATGCCTTCTTTA 2910254 Query 27153 TCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATA 27212 || ||| || ||| | |||| | ||||| | | || | || ||||| ||| Sbjct 2910255 TCCTGGATTTTAGCTTTGATATTTTCAATTGTGTCACTAGGCTCCGCCTCCAGAGTGATA 2910314 Query 27213 GATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 | ||||| ||||| ||||| |||||||| ||||| Sbjct 2910315 GTCTTGCCAGTCAGGGTTTTGACAAAGATCTGCAT 2910349 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424780882223016