Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cynoglossus_20semilaevis_20[refseq_20GCF_5F000523025.1_202014-01-28] 29,643 sequences; 470,199,494 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq4 208 1e-48 seq19 95.1 2e-14 >seq4 Length=20010643 Score = 208 bits (230), Expect = 1e-48 Identities = 960/1497 (64%), Gaps = 46/1497 (3%) Strand=Plus/Plus Query 110610 GATCCTTCATATCCTTGGACCAGAGACCAATCTTCTTGAGGTCATTGACGAGGTGCTTGT 110669 ||| |||||| |||| | ||| || || ||| | | ||||| |||| || || || Sbjct 16959823 GATTCTTCATTTCCTCGCTCCACAGTCCTCTCTCCGTCAGGTCTTTGAGCAGATGAGGGT 16959882 Query 110670 TGACAATGACAAACTCACCTGCGAGGGTTCTTCTCAGGTAGATGTTTGTTGTGTATGGTT 110729 | || || ||||| || | || ||| | ||||||||| | ||||| || | Sbjct 16959883 TCACGATCTGGAACTCTCCAGACAGAACTCTGCGGGTGTAGATGTTGCTGGTGTAGGGCT 16959942 Query 110730 CAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGGCATTGGTGCCATCA 110789 | | | | || || || |||| ||| || |||||||||||||| ||||| || ||||||| Sbjct 16959943 CGATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAGGCTGTGGGCATGGGGGCCATCA 16960002 Query 110790 AAAGACTGTTACGAAGACCCTTCTCCTTGATGCGTTCCTTGAGAACATCCCAGTCGTA-- 110847 |||||||| | | || | | ||| ||||| || | ||||||| | Sbjct 16960003 GCAGACTGTTCCTGACTCCATGTTTGGAGATCTTCTCCTTCAGCAGGGCCCAGTCCCACA 16960062 Query 110848 GTTGAGCTTGGTTTCACCTTCCCACATGTCAAACTGAAGCAC-CCCTTGG-GACGCGGGA 110905 | | | | || || || |||||||||| ||||||| | |||||| ||| ||| Sbjct 16960063 GGTCTG-TGGGCGTCTTCT-CCCACATGTCGTACTGAAGGATGCCCTTGCTGACT--GGA 16960118 Query 110906 GAACCCTCAAAGGTTTCATAGGAACCTTGGGCTTCAGCCAATTCACAGCTCGCCTCCAGG 110965 || || || | || ||||||| || || |||||| || ||||| ||||| ||| Sbjct 16960119 GACCCTTCGTACGTCTCATAGGGGCCCAACTCTGCAGCCAGCTCGCAGCTGGCCTCTAGG 16960178 Query 110966 GATGCGTGATACATGGTTTCAAAGATACGAGCATTCATCTCCTTGGCTTCATCTGAATCA 111025 | |||| || ||||| || ||||| | || | | || |||||| ||| Sbjct 16960179 GCGGCGTAGTAGATGGTCTCGAAGATTTGGATGTTGAGCAGCTGAGCTTCAGGGCTTTCA 16960238 Query 111026 AATGCGTAGCGGCACAAAATAAATACATCCGCGAGACCTTGAACACCCAAACCAATAGGT 111085 || | | | || || || || | || || ||||| || ||||| | || || || Sbjct 16960239 AAAGGGAAACGCATCAGGATGAAGGCGTCTGCCAGACCCTGGACACCAATTCCTATTGGC 16960298 Query 111086 CTGTGTCGCATATTAGACTTTCGCGCAGTCTCA---ACGGGATAAAAATTTCTGTCAATG 111142 ||||| ||| | || || ||| ||| ||| || ||||| | || |||| ||| Sbjct 16960299 CTGTGGCGCTTGTTGGAGTTTT---CAGCCTCGGGCACAGGATAGTAGTTGATGTCTATG 16960355 Query 111143 ACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTCATGAAGTTTTTCATAATCAAAA 111202 | ||| |||||| || | | ||| || | | ||||| | | ||| || Sbjct 16960356 ATCTTGTTCAGATTTCTGACGATCACCTTGGTCACCTGTGTCAGTTTGTTGAAGTCATAA 16960415 Query 111203 GTGCGAGTCTCTTCATTGACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCC 111262 || || |||| |||| ||| | || ||||| || |||| ||| ||||| ||| Sbjct 16960416 GTCCG---CTCTGGGGTGACGTACATGTTGAGAGCGATGGACGCCAGATTACAAACGGCC 16960472 Query 111263 GTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACATAAGTTGGAACTCTTAATCGTC 111322 ||| || | |||||||| | |||||||| || | |||| | ||| || || Sbjct 16960473 ACCTCGTCTGTGCTGGTGTACTCCACGATTTCTGTGCACAGGTTGCTGCACTTGATGGTG 16960532 Query 111323 CCCAAATTCTTTTGGTTACTCTTCTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTC 111382 |||| |||| ||||| |||||| ||||||| || || |||||||||||||||||||| Sbjct 16960533 CCCAGGTTCTGCTGGTTGCTCTTCCTGTTGCAGGCGTCTTTGTAGAGCATGTAGGGCGTA 16960592 Query 111383 CCCGTCTCCGTCTGTGATTTGAGAATAGCCTTCCAAACATCGGCGGCTGGTACAATGGCG 111442 || || || ||||| || | | || || | ||| | | || || | | Sbjct 16960593 CCGGTTTCTGTCTGCGACTCAATTATGGCGTGCCACAGCTGTTGAGCCTTCACCACGCGC 16960652 Query 111443 TTGGCCCGTCCCTCCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGC- 111501 || ||| || ||| ||| ||| | |||||||| | || |||| ||| ||| | || Sbjct 16960653 TTCACCCTCCCTTCCTTCTCATACCTAGTGTAGAGCTCCTCGAACTTCTC-CCCCCAGCA 16960711 Query 111502 GTCGGAGAGACCTGGTGCCTTGTCTGGACAGAAAAGAGACCATTGACCACCTTCC--TCA 111559 ||| ||||| || || ||||| | || ||||| | || || | || Sbjct 16960712 CTCGTCCAGACCGGGACACTCACTGGGACACATGAGTGACCA--GTCCTGGTTGCTTTCC 16960769 Query 111560 ACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAAAAGAGATCTCTACACCGAGCC 111619 |||| ||||||||| ||||| || ||||||| || | |||||||||| | | Sbjct 16960770 ACCCTCTTCATGAACAGGTCAGGGATCCACATGGCGTAGAAGAGATCTCGCGCTCTCTGC 16960829 Query 111620 TCTTCGTCACCTTGGTTGAGTCGTAA-CTCAAGGAACTCCATGATATCCGCGTGCCATGG 111678 || || | ||| ||| || ||| || ||||| || | || || ||||| || Sbjct 16960830 TCCTCCTTCCCTGTGTT-CTTCTTAAGATCCAGGAAGTCAAAGACGTCATAATGCCAGGG 16960888 Query 111679 CTCAAGATAGACTGCGATAGATCCCTTTCGACGC------CCAGCTTGATTTACATAGCG 111732 ||| | || | || | | ||| ||||| ||| | |||| || ||||| Sbjct 16960889 CTCCAAGTAAATGGCAAAGGCTCC---AGGACGCTTGTTGCCACCCTGATCCACGTAGCG 16960945 Query 111733 CGCTGTGGCGTTAAATACGCGAAGCATTGGAATAATACCATCTGATTGACCATTTGTCCC 111792 ||||||| |||| | || | ||||| || | | || | ||| | || || ||||| Sbjct 16960946 CGCTGTGTTGTTATACACTCTCAGCATGGGCACCAGGCCGTTTGAGTTTCCGTTGGTCCC 16961005 Query 111793 CCGAATACGAGAT-TTATTGGCTCTCA--CATCATGGATGTGCATCCCAATACCCCCAGC 111849 || || | | ||| ||| | || | | | || || || || || || Sbjct 16961006 AGCGAT-GTAGCTCCCAGTGGATCTGATGCAGC--TAACGGCCACACCGATGCCGCCGGC 16961062 Query 111850 CCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATACCGTTGATTGAGTCCTC 111909 | |||| ||||| | || || | | | || || ||||||| || | ||| ||| || Sbjct 16961063 CGACTTGGAGATGAGGGCGCAGTTCTTCAGCGTGTCATAGATGCCTTCGATGCTGTCGTC 16961122 Query 111910 CTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTC--TTGGTGTACCAGCATTGAAG 111967 ||| |||| | |||||||| ||||||| ||| || | ||| || || || |||||| Sbjct 16961123 CTTCATGGCCAGCAGGAAGCAGCTGGACAGCTGGGGCCGGTTG--GTTCCTGCGTTGAAG 16961180 Query 111968 AGGGTTGGTGTTGCGTGAATGAACATACCT-TGGGACATCTTGTCGTATGTCTCCAAGAC 112026 || || |||| ||||| ||||| || | | |||| | || ||| || | | | | Sbjct 16961181 AGCGTGGGTGACGCGTGGGTGAAC-CACTTCTCTGACAGCAGGTTGTAGGTATTGATGGC 16961239 Query 112027 AGAATCAATGTCTTCCCCGTGGATGCCGATTGCGACCCGCATGAACATGTACTGTGG 112083 | || || || | | |||||| || | | |||||||||| ||||| ||| || Sbjct 16961240 GGCGTCGATATCATTCTTGTGGATACCAACAGACACCCGCATGAGCATGTGCTGGGG 16961296 >seq19 Length=17744385 Score = 95.1 bits (104), Expect = 2e-14 Identities = 102/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 111265 CTCATCCTTATCTGTGTACTCTAAAATTTCTGTACATAAGTTGGAACTCTTAATCGTCCC 111324 ||| |||||| ||| |||| | || ||||| || | ||| || || || || || Sbjct 13834247 CTCGTCCTTACTGGTGAACTCCACGATCTCTGTGCACAGGTTACTACATTTGATGGTTCC 13834188 Query 111325 CAAATTCTTTTGGTTACTCTTCTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCC 111384 || |||| ||||| |||||| ||||||| || |||||||||||||||||||| || || Sbjct 13834187 CAGGTTCTGCTGGTTGCTCTTCCTGTTGCAGGCGTCCTTGTAGAGCATGTAGGGAGTTCC 13834128 Query 111385 CGTCTCCGTCTGTGA 111399 || || |||||||| Sbjct 13834127 TGTTTCTGTCTGTGA 13834113 Score = 82.4 bits (90), Expect = 1e-10 Identities = 141/203 (69%), Gaps = 4/203 (2%) Strand=Plus/Minus Query 110903 GGAGAACCCTCAAAGGTTTCATAGGAACCTTGGGCTTCAGCCAATTCACAGCTCGCCTCC 110962 |||||||| | ||||||| |||| ||| || |||| ||||||||| |||||| Sbjct 13834858 GGAGAACCAGGATAGGTTTCGTAGGTACCGAACCTCTCTGCCAGTTCACAGCTGGCCTCC 13834799 Query 110963 AGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCATCTCCTTGGC--TTCATCTG 111020 |||| |||| || ||||| |||||||| || |||| || ||| || || Sbjct 13834798 AGGGCGGCGTAGTAGATGGTCTCAAAGATCTGAATGTTCAGTAACTGGGCCTTTGGGCTT 13834739 Query 111021 AATCAAATGCGTAGCGGCACAAAATAAATACATCCGCGAGACCTTGAACACCCAAACCAA 111080 ||||| | ||||| | ||| || |||| || ||||| || ||||| | |||| Sbjct 13834738 --TCAAAGGGATAGCGCATGAGAATGAAGGCATCGGCCAGACCCTGGACACCGATGCCAA 13834681 Query 111081 TAGGTCTGTGTCGCATATTAGAC 111103 | |||||||||||| | || ||| Sbjct 13834680 TGGGTCTGTGTCGCCTGTTGGAC 13834658 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627799290592800