Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cynoglossus_20semilaevis_20[refseq_20GCF_5F000523025.1_202014-01-28] 29,643 sequences; 470,199,494 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq4 201 1e-46 seq7 84.2 3e-11 >seq4 Length=20010643 Score = 201 bits (222), Expect = 1e-46 Identities = 932/1460 (64%), Gaps = 42/1460 (3%) Strand=Plus/Plus Query 118182 TAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAG 118241 ||||| ||| | ||||| ||||| | | |||| ||||| |||| ||| ||||| |||||| Sbjct 16959921 TAGATGTTGCTGGTGTAGGGCTCGATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAG 16959980 Query 118242 GCTGTGGGCATGGGTGCCATGAGAAGGCTGTTACGGAGACCCTTTTCCCTAATGCGTTCC 118301 |||||||||||||| ||||| || || ||||| | || || | || || ||| Sbjct 16959981 GCTGTGGGCATGGGGGCCATCAGCAGACTGTTCCTGACTCCATGTTTGGAGATCTTCTCC 16960040 Query 118302 TTGAGAGCGTCCCAGTCGTAGTTGAGCTTTGT---CTCCCCCTGCCACATATCAAACTGG 118358 || || | ||||||| | || | ||| | | || |||||| || |||| Sbjct 16960041 TTCAGCAGGGCCCAGTCCCAC---AGGTCTGTGGGCGTCTTCTCCCACATGTCGTACTGA 16960097 Query 118359 AGGATACCTTGGGACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAAC-CTCC-G 118416 ||||| || | | |||| || || || | |||||||| |||||| ||| || | | Sbjct 16960098 AGGATGCCCTTGCTGACTGGAGACCCTTCGTACGTCTCATAGGGGCCC--AACTCTGCAG 16960155 Query 118417 CCAATTCGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTTTCAAAAATGCGAGCATTCA 118476 ||| ||| |||| ||||| ||||| |||| || || || || || || | || | Sbjct 16960156 CCAGCTCGCAGCTGGCCTCTAGGGCGGCGTAGTAGATGGTCTCGAAGATTTGGATGTTGA 16960215 Query 118477 TTGCCTTGGCCTCGTCGGAATCAAACGCGAGTCGGCACAAAATAAATACATCCGCGAGAC 118536 || || || | ||||| | || || || || || | || || |||| Sbjct 16960216 GCAGCTGAGCTTCAGGGCTTTCAAAAGGGAAACGCATCAGGATGAAGGCGTCTGCCAGAC 16960275 Query 118537 CTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTCCGAGCGGTCTC---CA 118593 | |||||||| | || ||||| | || | | | || || || ||| ||| || Sbjct 16960276 CCTGGACACCAATTCCTATTGGCCTGTGGCGCTTGTTGGAGTTTTCAGC---CTCGGGCA 16960332 Query 118594 CGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTT 118653 | ||||| | || | || || | | | || |||||| || || ||||| || | | Sbjct 16960333 CAGGATAGTAGTTGATGTCTATGATCTTGTTCAGATTTCTGACGATCACCTTGGTCACCT 16960392 Query 118654 CATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGA 118713 || || | | | ||| || | || |||| |||| ||| | || |||| Sbjct 16960393 GTGTCAGTTTGTTGAAGTCATAAGTCCG---CTCTGGGGTGACGTACATGTTGAGAGCGA 16960449 Query 118714 TTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTGC 118773 | |||||||||||||| || | ||| || | |||||||| | ||||| |||| Sbjct 16960450 TGGACGCCAGATTACAAACGGCCACCTCGTCTGTGCTGGTGTACTCCACGATTTCTGTGC 16960509 Query 118774 ACAAGTTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCAT 118833 ||| ||| | ||| |||||||||| ||||| || || ||| |||| || || | Sbjct 16960510 ACAGGTTGCTGCACTTGATGGTGCCCAGGTTCTGCTGGTTGCTCTTCCTGTTGCAGGCGT 16960569 Query 118834 CCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCAGA 118893 | ||||| |||||||| ||||| || || || || || |||| | || || | ||| | Sbjct 16960570 CTTTGTAGAGCATGTAGGGCGTACCGGTTTCTGTCTGCGACTCAATTATGGCGTGCCACA 16960629 Query 118894 CATCGGCAGCTGGCACAGTGGCGTTGGCTCGCCCCTCTTCCTCGTACTTTGTGTAGAGGG 118953 | ||| ||| | || | | ||| || | ||| ||| | |||||||| Sbjct 16960630 GCTGTTGAGCCTTCACCACGCGCTTCACCCTCCCTTCCTTCTCATACCTAGTGTAGAGCT 16960689 Query 118954 CTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTATCTGGG-CAGAAGAGA 119012 | || |||| || ||| | ||| || || || || | ||||| || | ||| Sbjct 16960690 CCTCGAACTTCTCCCCCCAGCACTCGTCCAGACCGGGACACTCA-CTGGGACACATGAGT 16960748 Query 119013 GACCATTGACCACCCTCCT--CAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCCG 119070 ||||| | || | || | |||| ||||||||| ||||| |||||||| | || Sbjct 16960749 GACCAGT--CCTGGTTGCTTTCCACCCTCTTCATGAACAGGTCAGGGATCCACATGGCGT 16960806 Query 119071 AGAAGAGATCCCGACAGCGAGCTTCTTCATCC--CCCTGATTGAGACGCAAC-TCCAAAA 119127 |||||||||| || || || || | ||| ||||| | | || |||| | Sbjct 16960807 AGAAGAGATCTCGC--GCTCTCTGCTCC-TCCTTCCCTGTGTTCTTCTTAAGATCCAGGA 16960863 Query 119128 AGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTACGACGA- 119186 |||| | || || ||||| || |||| ||| | || | | || | |||| Sbjct 16960864 AGTCAAAGACGTCATAATGCCAGGGCTCCAAGTAAATGGCAAAGGCTCC---AGGACGCT 16960920 Query 119187 -----CCAGCCTGGTTTACATACCTCGCAGTGGCGTTAAATACACGAAGCATTGGAATGA 119241 ||| |||| | || || | ||| ||| |||| | || | ||||| || | | Sbjct 16960921 TGTTGCCACCCTGATCCACGTAGCGCGCTGTGTTGTTATACACTCTCAGCATGGGCACCA 16960980 Query 119242 TACCATCGGATTGGCCATTTGTCCCCCGAATACGAGACTTATTGGCTCTGACATCGTGGA 119301 || | || | || || ||||| || | | ||| ||||| | | Sbjct 16960981 GGCCGTTTGAGTTTCCGTTGGTCCCAGCGATGTAGCTCCCAGTGGATCTGATGCAGCTAA 16961040 Query 119302 TGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACTGCCGT 119361 | || ||| || || || ||| |||| ||||| | ||||| | | | || || | | Sbjct 16961041 CGGCCACACCGATGCCGCCGGCCGACTTGGAGATGAGGGCGCAGTTCTTCAGCGTGTCAT 16961100 Query 119362 AGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGAGGCC 119421 |||| || ||||| ||| |||| | || | ||||||||||| |||| || |||| Sbjct 16961101 AGATGCCTTCGATGCTGTCGTCCTTCATGGCCAGCAGGAAGCAGCTGGACAGCTGGGGCC 16961160 Query 119422 TGGGTGTACCAGCGTTGAAGAGAGTTGGTGTCGCGTGGATGAACATACCT-TGGGACATC 119480 | || || ||||||||||| || |||| ||||||| ||||| || | | |||| | Sbjct 16961161 GGTTGGTTCCTGCGTTGAAGAGCGTGGGTGACGCGTGGGTGAAC-CACTTCTCTGACAGC 16961219 Query 119481 TTGTCGTAGGTCTCCAAGACGGCGGGAATGTCTTCCCCGTGAATACCGATCGAGACCCGC 119540 || |||||| | | | ||||| || || | | ||| ||||| | || |||||| Sbjct 16961220 AGGTTGTAGGTATTGATGGCGGCGTCGATATCATTCTTGTGGATACCAACAGACACCCGC 16961279 Query 119541 ATAAACATGTATTGGGGTGTTTCCATCAGGATACCATCGAGCCTCTGGAGGTAACTCTTC 119600 || | ||||| ||||| || || | || | || | || | ||||| | || Sbjct 16961280 ATGAGCATGTGCTGGGGACGCTCTGCCACTTTGCCGTTGATCTTCAGCAGGTAGGACCTC 16961339 Query 119601 TCCAAGGTCTTGAGACCAAA 119620 |||| ||||||| ||||| Sbjct 16961340 TCCAGAGTCTTGAAGCCAAA 16961359 >seq7 Length=13814722 Score = 84.2 bits (92), Expect = 3e-11 Identities = 84/109 (77%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 130035 CCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTCT 130094 |||| || | | ||| || ||||| |||||| || || ||||| || || ||||||| Sbjct 13788677 CCTCATCTCTGCTGATCAGCTCATTGGAGAAGGTCAAGCCGGGCATCAGGCCACGCTTCT 13788618 Query 130095 TCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCAC 130143 |||||||||| || ||| || || ||||||||||| || |||||||| Sbjct 13788617 TCAACCAGAAGATGGCAGCGAAGGAACCAGAGAAGAAAATTCCCTCCAC 13788569 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618206046567080