Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cynoglossus_20semilaevis_20[refseq_20GCF_5F000523025.1_202014-01-28] 29,643 sequences; 470,199,494 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq4 192 7e-44 seq18 84.2 3e-11 >seq4 Length=20010643 Score = 192 bits (212), Expect = 7e-44 Identities = 961/1499 (64%), Gaps = 50/1499 (3%) Strand=Plus/Minus Query 104222 CCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGATTCTGTC 104281 || ||| ||||| ||||||| ||| | | ||||| || | | || || || | | | Sbjct 16961296 CCCCAGCACATGCTCATGCGGGTGTCTGTTGGTATCCACAAGAATGATATCGACGCCGCC 16961237 Query 104282 TTGGAGACATACGACAAGATGTCCCA-AGGTATGTTCATTCACGCAACACCAACCCTCTT 104340 | | || ||| || | |||| | | || ||||| ||||| |||| || ||||| Sbjct 16961236 ATCAATACCTACAACCTGCTGTCAGAGAAGTG-GTTCACCCACGCGTCACCCACGCTCTT 16961178 Query 104341 CAATGCTGGTACACCAA--GACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGGAG 104398 ||| || || || ||| | ||||| ||||||| |||||||| | |||| ||||| Sbjct 16961177 CAACGCAGGAAC--CAACCGGCCCCAGCTGTCCAGCTGCTTCCTGCTGGCCATGAAGGAC 16961120 Query 104399 GACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCT 104458 ||| ||| | || ||||||| || || | | | || || | ||||| |||| ||| Sbjct 16961119 GACAGCATCGAAGGCATCTATGACACGCTGAAGAACTGCGCCCTCATCTCCAAGTCGGCC 16961060 Query 104459 GGGGGTATTGGGATGCACATCCATGATG--TGAGAGCCAATAA-ATCTCGTATTCGGGGG 104515 || || || || || | | | || | ||| ||| | | || || ||| Sbjct 16961059 GGCGGCATCGGTGTGGCCGTTA--GCTGCATCAGATCCACTGGGAGCTAC-ATCGCTGGG 16961003 Query 104516 ACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGC 104575 || || || | ||| | || | | || ||||| | || | |||| |||||||||| Sbjct 16961002 ACCAACGGAAACTCAAACGGCCTGGTGCCCATGCTGAGAGTGTATAACAACACAGCGCGC 16960943 Query 104576 TATGTAAATCAAGCTGG------GCGTCGAAAGGGATCTATCGCAGTCTATCTTGAGCCA 104629 || || |||| | ||| ||||| ||| | | || | || | ||||| Sbjct 16960942 TACGTGGATCAGGGTGGCAACAAGCGTCCT---GGAGCCTTTGCCATTTACTTGGAGCCC 16960886 Query 104630 TGGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGGCG 104689 ||||| || || | || ||||| || | ||| ||| | |||||| | Sbjct 16960885 TGGCATTATGACGTCTTTGACTTCCTGGATCTTAAGAAGAACACAGGGAAGGAGGAGCAG 16960826 Query 104690 CGGTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGA- 104748 | || |||||||||| ||| | ||||| || || || ||||||||||| || || Sbjct 16960825 AGAGCGCGAGATCTCTTCTACGCCATGTGGATCCCTGACCTGTTCATGAAGAGGGTGGAA 16960766 Query 104749 -GGAGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGA-TGCC 104806 | | || | ||||| ||| | ||||| || || ||||| ||| ||| Sbjct 16960765 AGCAACCAGG--ACTGGTCACTCATGTGTCCCAGTGAGTGTCCCGGTCTGGACGAGTGCT 16960708 Query 104807 GTGGGTGAGGAGTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGGTCGGGCGACT-GC 104865 | ||| ||| |||| || | || ||||| | ||| ||| | ||||| ||| || || Sbjct 16960707 GGGGG-GAGAAGTTCGAGGAGCTCTACACTAGGTATGAGAAGGAAGGGAGGGTGAAGCGC 16960649 Query 104866 GACGGTGCCAGCTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTAC 104925 | |||| ||| | ||||| | || || | |||| || || || || ||||| Sbjct 16960648 GT-GGTGAAGGCTCAACAGCTGTGGCACGCCATAATTGAGTCGCAGACAGAAACCGGTAC 16960590 Query 104926 ACCATACATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGT 104985 || |||||||| |||||||||||||| ||| ||||| || || |||| |||| Sbjct 16960589 GCCCTACATGCTCTACAAAGACGCCTGCAACAGGAAGAGCAACCAGCAGAACCTGGGCAC 16960530 Query 104986 GATCAAGAGTTCCAATCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGC 105045 |||||| | ||| || || ||||||||| |||| | || || ||| ||| ||| Sbjct 16960529 CATCAAGTGCAGCAACCTGTGCACAGAAATCGTGGAGTACACCAGCACAGACGAGGTGGC 16960470 Query 105046 TGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGACATT 105105 || ||||| || || || ||||||||| || ||| || |||||| ||| | Sbjct 16960469 CGTTTGTAATCTGGCGTCCATCGCTCTCAACATGTACGTCACCCCAGAG---CGGACTTA 16960413 Query 105106 TGATTATGAAAAACT-CCACGAAGTTACGAAAACTGTCACCAAAAACCTAAACAGAGTTA 105164 ||| | | ||||| ||| | || || || || || ||| || |||| | | Sbjct 16960412 TGACTTCAACAAACTGACAC-AGGTGACCAAGGTGATCGTCAGAAATCTGAACAAGATCA 16960354 Query 105165 TTGATAGAAATTTTTACCCCGT---TGAGACTGCTCGTAAATCTAATATGAGACACCGTC 105221 | || | || | || || || ||| ||| || || || | | | ||| | | Sbjct 16960353 TAGACATCAACTACTATCCTGTGCCCGAG---GCTGAAAACTCCAACAAGCGCCACAGGC 16960297 Query 105222 CAATTGGTCTCGGTGTTCAGGGTCTCGCGGATGTATTCATTCTTTGTCGCCACGCATTTG 105281 |||| || | ||||| |||||||| || || | ||||| || || | | |||| Sbjct 16960296 CAATAGGAATTGGTGTCCAGGGTCTGGCAGACGCCTTCATCCTGATGCGTTTCCCTTTTG 16960237 Query 105282 ATTCCGACGAAGCGAAGGAAATCAATGCGCGCATATTTGAGACCATGTATCACGCCGCTC 105341 | | ||||| || |||| | || || |||||||| || ||||||| | Sbjct 16960236 AAAGCCCTGAAGCTCAGCTGCTCAACATCCAAATCTTCGAGACCATCTACTACGCCGCCC 16960177 Query 105342 TTGAGGCGAGTTCAGAGTTGGCAG-AG-GTTGATGGTCCATATGAAACCTTTGAGGGTTC 105399 | ||||| || | ||| |||| | || |||| || || ||||| || | || || || Sbjct 16960176 TAGAGGCCAGCTGCGAGCTGGCTGCAGAGTTG--GGCCCCTATGAGACGTACGAAGGGTC 16960119 Query 105400 TCCAGCTTCA-CAAGGG-GTGCTTCAATTTGATATGTGGGAAGGTGA-GACCAAGCTTCA 105456 ||||| ||| |||||| | ||||| | || ||||||| || || | ||| | Sbjct 16960118 TCCAG--TCAGCAAGGGCATCCTTCAGTACGACATGTGGG-AGAAGACGCCCACAGACCT 16960062 Query 105457 CTACGACTGGGAAGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTCCT 105516 | ||||||| || ||||| ||| | | || | | |||||||| || Sbjct 16960061 GTGGGACTGGGCCCTGCTGAAGGAGAAGATCTCCAAACATGGAGTCAGGAACAGTCTGCT 16960002 Query 105517 CATGGCTCCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGA 105576 ||||| || ||||| |||||||||||||| || ||| |||| || || || | | | || Sbjct 16960001 GATGGCCCCCATGCCCACAGCCTCCACCGCCCAGATCCTGGGCAACAACGAGTCCATCGA 16959942 Query 105577 ACCCTACACGACGAACATCTATCTGAGAAGAACCCTCGCGGGAGAGTTTGTGATTGTCAA 105636 |||||||| | |||||||| | ||| || | |||||||| ||| || || Sbjct 16959941 GCCCTACACCAGCAACATCTACACCCGCAGAGTTCTGTCTGGAGAGTTCCAGATCGTGAA 16959882 Query 105637 CAAGCATCTCGTGGATGACCTCAAAGAGATTGGTCTCTGGTCCAAGGATATGAAGGATC 105695 | ||||| | | ||||| | |||| || || ||| | |||| |||||| ||| Sbjct 16959881 CCCTCATCTGCTCAAAGACCTGACGGAGAGAGGACTGTGGAGCGAGGAAATGAAGAATC 16959823 >seq18 Length=15207555 Score = 84.2 bits (92), Expect = 3e-11 Identities = 91/121 (75%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 94803 TGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGC 94862 ||||||| | | || ||||| ||| ||||| ||||| ||||||||||| ||| || Sbjct 10925685 TGAGCGAATTGTGGCCTTTGCTGCTGTGGAGGGAATCTTTTTCTCTGGTTCATTCGCTGC 10925744 Query 94863 TATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTAT 94922 || || |||||||||||| |||| || ||||| || || || ||| || ||||| || Sbjct 10925745 CATCTACTGGCTCAAGAAGAGAGGCCTAATGCCTGGGCTTACCTACTCTAATGAGCTGAT 10925804 Query 94923 C 94923 | Sbjct 10925805 C 10925805 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583044680001320