Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cynoglossus_20semilaevis_20[refseq_20GCF_5F000523025.1_202014-01-28] 29,643 sequences; 470,199,494 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq4 343 2e-89 seq7 98.7 1e-15 seq19 87.8 2e-12 >seq4 Length=20010643 Score = 343 bits (380), Expect = 2e-89 Identities = 878/1313 (67%), Gaps = 55/1313 (4%) Strand=Plus/Plus Query 78534 GTAGATGTTGGTCGTGTACGGCTCGAAAGCCTCGTTGTTCCCCATGATCTGGGCGGTCGA 78593 |||||||||| | ||||| ||||||| | ||||||||| |||| |||||||||||| || Sbjct 16959920 GTAGATGTTGCTGGTGTAGGGCTCGATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGA 16959979 Query 78594 GGCGGTCGGCATGGGTGCGACCAGTAGAGAATTCCGAAGACCATGCGTCTTGATCTCGAC 78653 ||| || |||||||| || | ||| ||| |||| | ||||| | ||||| | Sbjct 16959980 GGCTGTGGGCATGGGGGCCATCAGCAGACTGTTCCTGACTCCATGTTTGGAGATCTTCTC 16960039 Query 78654 CTTTAG----GCC--GTCCCAAAATTCATTCGCCGCGATCCCCCACATGTCCGGTTGAAG 78707 ||| || ||| |||||| | || | | || || |||||||||| ||||| Sbjct 16960040 CTTCAGCAGGGCCCAGTCCCACAGGTCTGTGGGCGTCTTCTCCCACATGTCGTACTGAAG 16960099 Query 78708 GATACCCTCGGACGCCGGCGACCCCTTGAACGTCTCGTAAGATCCCTCCTCCTTGGCGAG 78767 ||| |||| | | || ||||| | | ||||||| || | ||| ||| || || Sbjct 16960100 GATGCCCTTGCTGACTGGAGACCCTTCGTACGTCTCATAGGGGCCCAACTCTGCAGCCAG 16960159 Query 78768 TTCGCAT---GACTCGAGCAGGGCCGCGTGGTACACAGCCTCGAAGATGCCCTTGTTGAG 78824 ||||| | ||| || ||| |||| ||| | | ||||||||| ||||||| Sbjct 16960160 CTCGCAGCTGGCCTCTAG---GGCGGCGTAGTAGATGGTCTCGAAGATTTGGATGTTGAG 16960216 Query 78825 CTCGCGCGCCTT-GGTCTCGTCGAACG--AAAGGCCGAGCATCATGAAGACATCGGCCAG 78881 | | || | || || || || | ||| || | || |||||| | || ||||| Sbjct 16960217 CAGCTGAGCTTCAGGGCTT-TCAAAAGGGAAACGC--ATCAGGATGAAGGCGTCTGCCAG 16960273 Query 78882 GCCCTGGACGCCGATAGCGATCGGTCGGTGGCGCATGTTGCTCTTTCGGGCCGCCTCGGT 78941 |||||||| || || | || || | ||||||| ||||| ||| | ||||||| Sbjct 16960274 ACCCTGGACACCAATTCCTATTGGCCTGTGGCGCTTGTTGGAGTTTT---CAGCCTCGGG 16960330 Query 78942 C---GGGTAAAAGTTCCGATCGATGACGCGGTTCAGGTTACGCGTGACGA---CCCGAGT 78995 | || || |||| || |||| |||||| || | |||||| || || Sbjct 16960331 CACAGGATAGTAGTTGATGTCTATGATCTTGTTCAGATTTC---TGACGATCACCTTGGT 16960387 Query 78996 CACCTCGTACAATTTGGCGAAATCAAAAT---GATTTCCTTTGATGAAAGTCGGTAGGCA 79052 ||||| || |||| ||| ||| || | | | ||| | | | || | | Sbjct 16960388 CACCTGTGTCAGTTTGTTGAAGTCATAAGTCCGCTCTGGGGTGACGTACAT--GTTG--A 16960443 Query 79053 CAGCGATG----CCAGGTTGCACACGGCCGTCTCGTCCGGGCTAGAAACCTCGATGATTT 79108 ||||||| |||| || || |||||| |||||| | ||| | ||| | ||||| Sbjct 16960444 GAGCGATGGACGCCAGATTACAAACGGCCACCTCGTCTGTGCTGGTGTACTCCACGATTT 16960503 Query 79109 CTGTGCACAAATTAGACGACTTGATGGTGCCGATGTTCTTCTGGTTGCTCTTCTCGTTAC 79168 ||||||||| || ||||||||||||| | ||||| ||||||||||||| ||| | Sbjct 16960504 CTGTGCACAGGTTGCTGCACTTGATGGTGCCCAGGTTCTGCTGGTTGCTCTTCCTGTTGC 16960563 Query 79169 AGGCGTCCTTGTAGCACATGTACGGCGTCCCGGTCTCAACCTGACTCTTGAGAACGCCGT 79228 ||||||| |||||| |||||| ||||| ||||| || ||| || | | | ||| Sbjct 16960564 AGGCGTCTTTGTAGAGCATGTAGGGCGTACCGGTTTCTGTCTGCGACTCAATTATGGCGT 16960623 Query 79229 CCCAGATGTCCCGGGCCCGGACAACCTTCTTGTACCGACCCTG--TGCGACGTACGTCCG 79286 ||| | | | ||| || || ||| ||| |||| | | | ||| | Sbjct 16960624 GCCACAGCTGTTGAGCCTTCACCACGCGCTTC-ACCCTCCCTTCCTTCT-CATACCTAGT 16960681 Query 79287 GTACAACTCGTTGAAAGCCTCCCCATAGACATCGGGCAGGCCCGGGCACTCGTGCGGGCA 79346 ||| | ||| | ||| |||||| || ||| ||| || || ||||| || || Sbjct 16960682 GTAGAGCTCCTCGAACTTCTCCCCCCAGCACTCGTCCAGACCGGGACACTCACTGGGACA 16960741 Query 79347 CATCAGGTGCCAGTCCTCGTCCTTCTCAACCTTCTCCATGAAGAGGTCCGGGATCCACAG 79406 ||| || |||||||| || | || ||| ||| |||||| ||||| |||||||||| Sbjct 16960742 CATGAGTGACCAGTCCTGGTTGCTTTCCACCCTCTTCATGAACAGGTCAGGGATCCACAT 16960801 Query 79407 GGCCGTGAAGAGGTCGCGGCAACGCATCTCCTCGTCGCCCTG-GTTCAGACGCAGCTCGA 79465 ||| |||||| || || | | |||||| | ||||| |||| || || | Sbjct 16960802 GGCGTAGAAGAGATCTCGCGCTCTCTGCTCCTCCTT-CCCTGTGTTCTTCTTAAGATCCA 16960860 Query 79466 GAAAGTCCATGATGTCGGCGTGCCACGGCTCCAGATAGATGGCGAACGAACCCTTGCGCT 79525 | ||||| | || ||| ||||| ||||||| || ||||| || | || |||| Sbjct 16960861 GGAAGTCAAAGACGTCATAATGCCAGGGCTCCAAGTAAATGGCAAAGGCTCCAGGACGCT 16960920 Query 79526 TGCCGCCGCCCTGGTTGACGTACCGGGCCGTGTTGTTGAAAACTCGGAGCATGGGCACGA 79585 || ||| ||||| | ||||| || || |||||||| | |||| ||||||||||| | Sbjct 16960921 TGTTGCCACCCTGATCCACGTAGCGCGCTGTGTTGTTATACACTCTCAGCATGGGCACCA 16960980 Query 79586 TGCCGTCGGCGACGCCGTTCGTCCCGTTGATTCGTGTACCGCTCGCCCGAA-TGTTCGAG 79644 ||||| | | ||||| ||||| ||| ||| | | | || || | || Sbjct 16960981 GGCCGTTTGAGTTTCCGTTGGTCCCAGCGAT----GTAGCTCCCAGTGGATCTGATGCAG 16961036 Query 79645 C-AGTGG--ATTCCGATGCCCCCGGACCACTTGGAGATGTGCGCGCACTCCTTGAGCGTC 79701 | | || | |||||||| |||| | ||||||||||| | ||||| | ||| ||||| Sbjct 16961037 CTAACGGCCACACCGATGCCGCCGGCCGACTTGGAGATGAGGGCGCAGTTCTTCAGCGTG 16961096 Query 79702 TCGTAGATGCCCTCGATCGAGTCGTCCTTCATAGCGACCAGGAAGCAGCTCGACATCTGT 79761 || |||||||| ||||| |||||||||||| || | |||||||||||| |||| ||| Sbjct 16961097 TCATAGATGCCTTCGATGCTGTCGTCCTTCATGGCCAGCAGGAAGCAGCTGGACAGCTGG 16961156 Query 79762 GGGTTGTTCGTACCGGCGTTGAAGAGGGTCGGCGTCGCGTGCGTGAAGAACTT 79814 || ||| || || ||||||||||| || || | |||||| ||||| |||| Sbjct 16961157 GGCCGGTTGGTTCCTGCGTTGAAGAGCGTGGGTGACGCGTGGGTGAACCACTT 16961209 Score = 253 bits (280), Expect = 2e-62 Identities = 862/1327 (65%), Gaps = 41/1327 (3%) Strand=Plus/Minus Query 19169 ACATACGACCTGATGAGCCAGAAGTTCTTCACGCACGCGACGCCGACCCTTTTCAACGCC 19228 || ||| ||||| || |||||| ||||| |||||| | || || || |||||||| Sbjct 16961230 ACCTACAACCTGCTGTCAGAGAAGTGGTTCACCCACGCGTCACCCACGCTCTTCAACGCA 16961171 Query 19229 GGTACGAACAACCCGCAGATGTCGAGCTGTTTCCTAGTGGCTATGAAGGATGACAGCATT 19288 || || ||| || ||| |||| ||||| ||||| |||| |||||||| |||||||| Sbjct 16961170 GGAACCAACCGGCCCCAGCTGTCCAGCTGCTTCCTGCTGGCCATGAAGGACGACAGCATC 16961111 Query 19289 GAGGGCATCTACGAGACGCTCAAGGAGTGCGCGCACATCTCCAAGTGGTCCGGGGGTATC 19348 || |||||||| || ||||| ||| | ||||| | ||||||||||| | |||| || ||| Sbjct 16961110 GAAGGCATCTATGACACGCTGAAGAACTGCGCCCTCATCTCCAAGTCGGCCGGCGGCATC 16961051 Query 19349 GGGAT--CCACT-GCTCGAATATCCGGTCGAGTGGTACACGAATCAATGGGACGAACGGA 19405 || | || | ||| ||| | || | ||| | ||| |||||| |||||| Sbjct 16961050 GGTGTGGCCGTTAGCT---GCATCAGATCCACTGGGAGCTACATCGCTGGGACCAACGGA 16960994 Query 19406 GTAGCCGACGGTATCGTCCCAATGCTCCGCGTCTTCAACAACACGGCCAGGTACGTCAAC 19465 | |||| | || || ||||| | || | |||||||| || | ||||| | Sbjct 16960993 AACTCAAACGGCCTGGTGCCCATGCTGAGAGTGTATAACAACACAGCGCGCTACGTGGAT 16960934 Query 19466 CAGGGGGGCGGCAAACGCAAGGGCTCGTTCGCCATCTACCTCGAGCCATGGCACGCGGAC 19525 ||||| ||| ||| || || | || ||||| ||| | ||||| ||||| ||| Sbjct 16960933 CAGGGTGGCAACAAGCGTCCTGGAGCCTTTGCCATTTACTTGGAGCCCTGGCATTATGAC 16960874 Query 19526 GTCATGGATTTCCTCGAACTGCGCCTGAAC-CAGGGTGACGAGGAGATGCGCTGTCGCGA 19584 ||| | || ||||| || || |||| ||||| | |||||| | | || || Sbjct 16960873 GTCTTTGACTTCCTGGATCTTAAGAAGAACACAGGG-AAGGAGGAGCAGAGAGCGCGAGA 16960815 Query 19585 CCTCTTCACGGCCTTGTGGATTCCGGACCTATTCATGGAGAAGGTTGAGAAGGACGAAGA 19644 |||||| ||| ||||||| || ||||| |||||| ||| ||| || | || | || Sbjct 16960814 TCTCTTCTACGCCATGTGGATCCCTGACCTGTTCATGAAGAGGGTGGAAAGCAACCAGGA 16960755 Query 19645 ATGGCACCTGATGTGCCCGCACGAATGCCCTGGCCTACCCGACGTCTACGGCGAGGCGTT 19704 ||| || ||||| || || || || || || ||| || || ||| ||| Sbjct 16960754 CTGGTCACTCATGTGTCCCAGTGAGTGTCCCGGTCTGGACGAGTGCTGGGGGGAGAAGTT 16960695 Query 19705 CAATGAGTTGTACCGGACTTACGTA-GCCCAG---GGCCGGTTCAAGAAGGTGGTCCGGG 19760 | | ||| | ||| || || ||| | || || || | ||| ||||| || Sbjct 16960694 CGAGGAGCTCTAC---AC-TAGGTATGAGAAGGAAGGGAGGGTGAAGCGCGTGGTGAAGG 16960639 Query 19761 CCCGGGACGTCTGGGACCGCGTCCTCAAAAGCCAGGTCGAGACCGGCACACCGTACATGT 19820 | | | | ||| || | | | | ||| || ||||| || || |||||| Sbjct 16960638 CTCAACAGCTGTGGCACGCCATAATTGAGTCGCAGACAGAAACCGGTACGCCCTACATGC 16960579 Query 19821 GCTACAAGGACGCCGCGAACGCCAAGTCAAATCAGAAGAACATCGGCGCGATCAAGTCGT 19880 |||||| |||||| ||| ||| || ||| ||||| | ||| | ||||||| Sbjct 16960578 TCTACAAAGACGCCTGCAACAGGAAGAGCAACCAGCAGAACCTGGGCACCATCAAGTGCA 16960519 Query 19881 CCAACCTGTGTACTGAAATCATGGAGGTTTCCAAGCCGGACGAGACTGCCGTGTGTAATC 19940 ||||||||| || |||||| ||||| ||| | |||||| ||||| ||||||| Sbjct 16960518 GCAACCTGTGCACAGAAATCGTGGAGTACACCAGCACAGACGAGGTGGCCGTTTGTAATC 16960459 Query 19941 TGGCGTCCCTGTGCCTGCCGACTTTCGTCA----AG-GCCTCCTCCTTCGACTTTGCCAA 19995 |||||||| | || | | ||||| || || || | ||||| ||| Sbjct 16960458 TGGCGTCCATCGCTCTCAACATGTACGTCACCCCAGAGCGGACT--TATGACTTCAACAA 16960401 Query 19996 ATTGTACGAGGTGACCCGGG---TCGTCACGCGTAATCTGAATCGCGTCATCGATCGGAA 20052 | || |||||||| || |||||| | |||||||| |||| || || Sbjct 16960400 ACTGACACAGGTGACCAAGGTGATCGTCA---GAAATCTGAACAAGATCATAGACATCAA 16960344 Query 20053 CTTTTACCC---GACCGAGGCGGCGCGCAAGTCGAATATGCGCCACCGGCCGATCGCGAT 20109 || || || | ||||||| | || || || | ||||||| |||| || | || Sbjct 16960343 CTACTATCCTGTGCCCGAGGCTG---AAAACTCCAACAAGCGCCACAGGCCAATAGGAAT 16960287 Query 20110 CGGCGTCCAGGGCCTGGCCGACGTTTTCATGATGCTCGGCCTCTCATTCGACGATCCCAA 20169 || |||||||| ||||| |||| ||||| || | | || | || || || | Sbjct 16960286 TGGTGTCCAGGGTCTGGCAGACGCCTTCATCCTGATGCGTTTCCCTTTTGAAAGCCCTGA 16960227 Query 20170 GGCGCGCGAGCTCAACAAGGGCATCTTCGAGGCCGTGTACCACGCGGCCCTCCTGGAATC 20229 || | |||||||| ||||||||| || | ||| |||| ||||| || Sbjct 16960226 AGCTCAGCTGCTCAACATCCAAATCTTCGAGACCATCTACTACGCCGCCCTAGAGGCCAG 16960167 Query 20230 GTGCGAACTCGCCAAAGAGGACGGCCCGTACGAGACGTTCAAGGGGTCGCCCGCGTCCGA 20289 ||||| || || |||| ||||| || ||||||| | | ||||| || | | | Sbjct 16960166 CTGCGAGCTGGCTGCAGAGTTGGGCCCCTATGAGACGTACGAAGGGTCTCCAGTCAGCAA 16960107 Query 20290 GGGTATCCTCCAGCCGGACATGTGGGGCGTCACTGAGAATGAGTTTTGG---AGCGCC-- 20344 ||| ||||| ||| |||||||||| || | || | ||| | ||| Sbjct 16960106 GGGCATCCTTCAGTACGACATGTGGGAGAAGACGCCCACAGACCTGTGGGACTGGGCCCT 16960047 Query 20345 -CTCAAGGTTGAGATCAAGACCCACGGGCTTCGCAACTCGTTGCTCGTCGCGCCCATGCC 20403 || |||| ||||| | || || | | ||| |||| | || |||||||| Sbjct 16960046 GCTGAAGGAGAAGATCTCCAAACATGGAGTCAGGAACAGTCTGCTGATGGCCCCCATGCC 16959987 Query 20404 GACCGCCTCGACCGCCCAGATCATGGGGAACAACGAGGCTTTCGAGCCGTACACGACCAA 20463 || ||||| |||||||||||| |||| ||||||||| | ||||||| ||||| | ||| Sbjct 16959986 CACAGCCTCCACCGCCCAGATCCTGGGCAACAACGAGTCCATCGAGCCCTACACCAGCAA 16959927 Query 20464 CATCTAC 20470 ||||||| Sbjct 16959926 CATCTAC 16959920 Score = 96.9 bits (106), Expect = 4e-15 Identities = 129/177 (73%), Gaps = 2/177 (1%) Strand=Plus/Plus Query 78226 TTCCATCCGTACAGGTGCATACTCGACAGCTTGGCCAGACTCGGGTTCTCCA-TGAAGAT 78284 ||||| ||||| | |||||| || ||||| ||| ||| | | ||| ||| || || ||| Sbjct 16959508 TTCCAGCCGTAGAAGTGCATGCTGGACAGTTTG-CCATAATTGGGCTCTGCAATGTGGAT 16959566 Query 78285 GTTGAGCGACTGGGACTGGTCGATGTACGCACCGCGGTCGGCCGCCATGTCGATGACCGA 78344 ||| || |||||| |||||||||||| || ||||||||||| ||||| | || | || Sbjct 16959567 GTTCAGGGACTGGCTCTGGTCGATGTAGGCGCCGCGGTCGGCGGCCATCTTGAGAATCGT 16959626 Query 78345 CTTTTGCGGAATCTCCCAGATGGTCCGGTAAATGGCCTTCAGCTCTTCCTGGATGTC 78401 ||| || | || ||||| | ||| ||| | |||||| || || |||| || Sbjct 16959627 CTTCTGGGAGATTTCCCACACGGTTTTGTAGAGCTGCTTCAGATCGTCTGGGATCTC 16959683 Score = 89.7 bits (98), Expect = 6e-13 Identities = 124/170 (73%), Gaps = 4/170 (2%) Strand=Plus/Minus Query 20610 CCCAGA--ACCTCAAGGACATTTACAGGACCGTATGGGAAATCCCACAGAAGAGCATCAT 20667 |||||| | || ||| | | |||| ||||| ||||||||| | ||||||| || | Sbjct 16959678 CCCAGACGATCTGAAGCAGCTCTACAAAACCGTGTGGGAAATCTCCCAGAAGACGATTCT 16959619 Query 20668 CGACATGGCGGCCGATCGCGGCGCCTACATCGACCAGTCCCAGTCGCTCAATGTCTTCA- 20726 | | ||||| ||||| ||||||||||||||||||||| |||||| || || || || Sbjct 16959618 CAAGATGGCCGCCGACCGCGGCGCCTACATCGACCAGAGCCAGTCCCTGAACATCCACAT 16959559 Query 20727 TGGAGAATCCGAGCCTGGCGAAGCTGAGCTCCATGCATATGTACGGCTGG 20776 || ||| || | |||| || ||| | |||||| | ||||||||| Sbjct 16959558 TGCAGAGCCCAATTATGGC-AAACTGTCCAGCATGCACTTCTACGGCTGG 16959510 >seq7 Length=13814722 Score = 98.7 bits (108), Expect = 1e-15 Identities = 88/108 (81%), Gaps = 2/108 (2%) Strand=Plus/Plus Query 59991 GCTTTTGCATGC-GTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGGCT 60049 || ||||| ||| ||||| ||||| ||||||||||| || ||| ||| || |||||| | Sbjct 13788557 GCCTTTGC-TGCAGTGGAGGGAATTTTCTTCTCTGGTTCCTTCGCTGCCATCTTCTGGTT 13788615 Query 60050 CAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGAT 60097 || ||||||||||| ||||| ||| ||| |||||||| |||||||| Sbjct 13788616 GAAGAAGCGTGGCCTGATGCCCGGCTTGACCTTCTCCAATGAGCTGAT 13788663 >seq19 Length=17744385 Score = 87.8 bits (96), Expect = 2e-12 Identities = 95/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 79080 CTCGTCCGGGCTAGAAACCTCGATGATTTCTGTGCACAAATTAGACGACTTGATGGTGCC 79139 ||||||| || | | ||| | ||| |||||||||| ||| | |||||||| || Sbjct 13834247 CTCGTCCTTACTGGTGAACTCCACGATCTCTGTGCACAGGTTACTACATTTGATGGTTCC 13834188 Query 79140 GATGTTCTTCTGGTTGCTCTTCTCGTTACAGGCGTCCTTGTAGCACATGTACGGCGTCCC 79199 | ||||| ||||||||||||| ||| ||||||||||||||| |||||| || || || Sbjct 13834187 CAGGTTCTGCTGGTTGCTCTTCCTGTTGCAGGCGTCCTTGTAGAGCATGTAGGGAGTTCC 13834128 Query 79200 GGTCTC 79205 || || Sbjct 13834127 TGTTTC 13834122 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548321550991920