Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cynoglossus_20semilaevis_20[refseq_20GCF_5F000523025.1_202014-01-28] 29,643 sequences; 470,199,494 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq4 145 8e-30 seq7 104 3e-17 seq18 89.7 6e-13 seq8 82.4 8e-11 >seq4 Length=20010643 Score = 145 bits (160), Expect = 8e-30 Identities = 466/707 (66%), Gaps = 22/707 (3%) Strand=Plus/Minus Query 53267 AAGTACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACGAATCACCCTCAGATG 53326 |||| || || ||||| | || || || |||||||| || || || | || ||| || Sbjct 16961209 AAGTGGTTCACCCACGCGTCACCCACGCTCTTCAACGCAGGAACCAACCGGCCCCAGCTG 16961150 Query 53327 TCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGCATCTACGAGACGCTC 53386 || |||||||||||| |||| |||||||| ||| ||||| |||||||| || ||||| Sbjct 16961149 TCCAGCTGCTTCCTGCTGGCCATGAAGGACGACAGCATCGAAGGCATCTATGACACGCTG 16961090 Query 53387 AAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTAT--CCACT-GCTCGAAC 53443 ||| | || |||| ||||||||||| | | || || |||||| | || | ||| | Sbjct 16961089 AAGAACTGCGCCCTCATCTCCAAGTCGGCCGGCGGCATCGGTGTGGCCGTTAGCT---GC 16961033 Query 53444 GTCCGTGCGAACGGCACACCAATCAAGGGGACGAACGGCGTCGCCGATGGAATCGTGCCT 53503 || | | | || | ||| ||||| ||||| | | | || | ||||| Sbjct 16961032 ATCAGATCCACTGGGAGCTACATCGCTGGGACCAACGGAAACTCAAACGGCCTGGTGCCC 16960973 Query 53504 ATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTGGTGGGAAGCGCAAG 53563 ||||| | || | |||||||| || || ||||| | |||||||| ||||| Sbjct 16960972 ATGCTGAGAGTGTATAACAACACAGCGCGCTACGTGGATCAGGGTGGCAACAAGCGTCCT 16960913 Query 53564 GGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGGAGTTTCTCGAGCTG 53623 || | || ||||| ||| | ||||| ||||| ||| | | || || || || || Sbjct 16960912 GGAGCCTTTGCCATTTACTTGGAGCCCTGGCATTATGACGTCTTTGACTTCCTGGATCTT 16960853 Query 53624 CGTCTGAA-TCAGGG--TGACGA--AGAGATGCGCTGCCGTGACCTGTT-TACAGCTCTG 53677 ||| ||||| || || ||||| ||| || || || || ||| || || Sbjct 16960852 AAGAAGAACACAGGGAAGGAGGAGCAGAGA-GCG----CGAGATCTCTTCTAC-GCCATG 16960799 Query 53678 TGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGTACCTGATGTGC 53737 ||||| || ||||| |||||| | | |||||| | || |||| |||| || ||||| Sbjct 16960798 TGGATCCCTGACCTGTTCATGAAGAGGGTGGAAAGCAACCAGGACTGGTCACTCATGTGT 16960739 Query 53738 CCGAACGAGTGCCCCGGCCTCCA-GGGTGTCTACGGTGAGGAGTTTAACGAGATGTATCG 53796 || | ||||| ||||| || | | ||| || || ||| |||| | ||| | || Sbjct 16960738 CCCAGTGAGTGTCCCGGTCTGGACGAGTG-CTGGGGGGAGAAGTTCGAGGAGCTCTACAC 16960680 Query 53797 GACGTACG-CAGTTCAGGGCCGCTACAAGAAGAAGGTCAAGGCGCGTGAGGTATGGGATG 53855 | ||| | | |||| | | ||| ||| ||||| | || | ||| | | Sbjct 16960679 TAGGTATGAGAAGGAAGGGAGGGT-GAAGCGCGTGGTGAAGGCTCAACAGCTGTGGCACG 16960621 Query 53856 CAATCCTCAAGAGCCAGGTGGAGACGGGAACGCCGTACATGTGCTACAAGGATTCGGTCA 53915 | || | || ||| || || || ||||| |||||| |||||| || | || Sbjct 16960620 CCATAATTGAGTCGCAGACAGAAACCGGTACGCCCTACATGCTCTACAAAGACGCCTGCA 16960561 Query 53916 ACGAGAAGAGCAACCAGAAGAACATCGGCGTCATCAAATCGAGCAAC 53962 || ||||||||||||| ||||| | ||| |||||| | |||||| Sbjct 16960560 ACAGGAAGAGCAACCAGCAGAACCTGGGCACCATCAAGTGCAGCAAC 16960514 >seq7 Length=13814722 Score = 104 bits (114), Expect = 3e-17 Identities = 96/122 (79%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 74772 TCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTCTTC 74831 ||||||||||| |||| ||||| || || | | ||| ||||| || |||||||||||| Sbjct 13788675 TCATCTCTGCTGATCAGCTCATTGGAGAAGGTCAAGCCGGGCATCAGGCCACGCTTCTTC 13788616 Query 74832 AACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAGGCG 74891 ||||| ||||||||| |||||||||| |||||| || || || || |||||||| Sbjct 13788615 AACCAGAAGATGGCAGCGAAGGAACCAGAGAAGAAAATTCCCTCCACTGCAGCAAAGGCC 13788556 Query 74892 AC 74893 || Sbjct 13788555 AC 13788554 >seq18 Length=15207555 Score = 89.7 bits (98), Expect = 6e-13 Identities = 94/124 (76%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 74772 TCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTCTTC 74831 ||||||||||| |||| ||||| || | | ||| |||||||| || || | |||||| Sbjct 10925816 TCATCTCTGCTGATCAGCTCATTAGAGTAGGTAAGCCCAGGCATTAGGCCTCTCTTCTTG 10925757 Query 74832 AACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAGGCG 74891 | ||| |||||||| ||| |||||| ||| ||||| || || ||| |||||||| Sbjct 10925756 AGCCAGTAGATGGCAGCGAATGAACCAGAGAAAAAGATTCCCTCCACAGCAGCAAAGGCC 10925697 Query 74892 ACAA 74895 |||| Sbjct 10925696 ACAA 10925693 Score = 82.4 bits (90), Expect = 8e-11 Identities = 93/125 (74%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364 |||||||||||||||| ||| |||||||| ||||| ||| | || ||||| || || Sbjct 9533311 GTGAAAATGTAACGAGGGCTGGCAGCATCTTTGCCTCCATTGATGCGAGTACCAAACTGA 9533370 Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424 || |||| || | ||| | ||||||| || |||||||| || |||||||| || Sbjct 9533371 CCCAGGGGCTGCAGAATGTTGACGTTGTTGCTTCCAACAAAGTTCTGGGCCAAGTTCACT 9533430 Query 117425 ATCGT 117429 || || Sbjct 9533431 ATTGT 9533435 >seq8 Length=30151083 Score = 82.4 bits (90), Expect = 8e-11 Identities = 93/125 (74%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 152029 GTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGT 152088 |||||||||||||| | |||||| | || || ||||| ||||| || |||||||| Sbjct 5559927 GTGAAGATGTATCGAGGGCTGGCAGAGTCTTTACCACCGTGCAGCCTGGTCCCAAACTGA 5559868 Query 152089 CCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACA 152148 ||| |||| || ||||| | ||||||| ||||| || ||||| |||||| ||| Sbjct 5559867 CCAAGAGGCTGCAGCAGGTTCATGTTGTTGCTTCCCACAAAGTTCTGGGCCAAACCCACG 5559808 Query 152149 ATCGT 152153 || || Sbjct 5559807 ATGGT 5559803 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547013235951400