Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cynoglossus_20semilaevis_20[refseq_20GCF_5F000523025.1_202014-01-28] 29,643 sequences; 470,199,494 total letters Query= NC_028379.1 Length=205896 Score E Sequences producing significant alignments: (Bits) Value seq6 147 3e-30 >seq6 Length=18840743 Score = 147 bits (162), Expect = 3e-30 Identities = 261/379 (69%), Gaps = 4/379 (1%) Strand=Plus/Minus Query 13692 GAGTTTCCCATCGCCTACTCGATCGTGATCCACCACAAGATCGAGATGTTCGAGCGCCTC 13751 || || |||||||| || || || |||||||| | || ||||||||||| ||||| || Sbjct 8841226 GACTTCCCCATCGCTTATTCCATAGTGATCCATGAAAAAATCGAGATGTTTGAGCGACTT 8841167 Query 13752 CTGAGGGCCATCTACGCCCCGCAGAACCTCTACTGCGTCCACGTGGACTCCAAGTCCGGC 13811 ||| | |||||||||| || |||||| ||||||| || || |||||| ||||| Sbjct 8841166 CTGCGATCCATCTACGCTCCTCAGAACGTCTACTGTGTGCATGTGGACCAGAAGTCGCCG 8841107 Query 13812 GACGAGTTCATCCGGGGCGTCTCGGCCATCGCCAGGTGCTTCCCTAACGTGGCCCTGGCC 13871 || || || | || ||| |||| || | || || || |||||| | | ||| Sbjct 8841106 GAGGAATTTCACAAGGCCGTGGCGGCGATTGTTGCCTGTTTTCCCAACGTGTTCATCGCC 8841047 Query 13872 CACCGGCTGCACGACGTGGTGTACGGCTCCTGGAGTCGCGTGCAGGCCGACCTCAGCTGC 13931 | | | |||| ||||||| || |||| || || || || || || | |||| Sbjct 8841046 AGTAAGTTAGAAAACGTCGTGTACGCGTCTTGGACCCGAGTCCAAGCTGATCTGAACTGC 8840987 Query 13932 ATGTCGGACCTG--GACGCCTCCCCCGTCAAGTGGAGGTACCTGCTCAACCTGTGCGGGA 13989 ||| ||| ||| || | ||| ||||||||||| ||| ||||| ||| || || | Sbjct 8840986 ATGGAGGATCTGCTGAAG--TCCAGCGTCAAGTGGAAGTATCTGCTGAACACCTGTGGCA 8840929 Query 13990 TGGACTTCCCGCTCAAGACCAACCTGGAGATCGTGCGGGCGCTGAAGGCCCTGGGCGGCA 14049 ||||| || | || |||||| || ||||| | ||| |||||| || || || | Sbjct 8840928 CAGACTTTCCCATTAAAACCAACGGCGAAATCGTACAGGCACTGAAGACCTTGAATGGGA 8840869 Query 14050 AGAACGCCCTGGAGAGCGA 14068 |||| | |||||||||| Sbjct 8840868 GGAACAGCATGGAGAGCGA 8840850 Score = 140 bits (154), Expect = 4e-28 Identities = 257/375 (69%), Gaps = 4/375 (1%) Strand=Plus/Minus Query 13692 GAGTTTCCCATCGCCTACTCGATCGTGATCCACCACAAGATCGAGATGTTCGAGCGCCTC 13751 || || |||||||| || || || |||||||| | || ||||||||||| || || || Sbjct 8844531 GACTTCCCCATCGCTTATTCCATAGTGATCCATGAAAAAATCGAGATGTTTGAACGACTT 8844472 Query 13752 CTGAGGGCCATCTACGCCCCGCAGAACCTCTACTGCGTCCACGTGGACTCCAAGTCCGGC 13811 ||| | |||||||||| || |||||| ||||||| || || |||||| ||||| Sbjct 8844471 CTGCGATCCATCTACGCTCCTCAGAACGTCTACTGTGTGCATGTGGACCAGAAGTCGCCG 8844412 Query 13812 GACGAGTTCATCCGGGGCGTCTCGGCCATCGCCAGGTGCTTCCCTAACGTGGCCCTGGCC 13871 || || || | || ||| ||| ||||| || || || |||||| | | ||| Sbjct 8844411 GAGGAATTTCACAAGGCCGTGGCGGGGATCGCTGCCTGTTTTCCCAACGTGTTCATCGCC 8844352 Query 13872 CACCGGCTGCACGACGTGGTGTACGGCTCCTGGAGTCGCGTGCAGGCCGACCTCAGCTGC 13931 | | | |||| ||||||| || |||| || || || || || || | |||| Sbjct 8844351 AGTAAGTTAGAAAACGTCGTGTACGCGTCTTGGACCCGAGTCCAAGCTGATCTGAACTGC 8844292 Query 13932 ATGTCGGACCTG--GACGCCTCCCCCGTCAAGTGGAGGTACCTGCTCAACCTGTGCGGGA 13989 ||| ||| ||| || | ||| ||||||||||| ||| ||||| ||| || || | Sbjct 8844291 ATGGAGGATCTGCTGAAG--TCCAGCGTCAAGTGGAAGTATCTGCTGAACACCTGTGGCA 8844234 Query 13990 TGGACTTCCCGCTCAAGACCAACCTGGAGATCGTGCGGGCGCTGAAGGCCCTGGGCGGCA 14049 ||||| || | || |||||| || ||||| | ||| |||||| || || || | Sbjct 8844233 CAGACTTTCCCATTAAAACCAACGGCGAAATCGTACAGGCACTGAAGACCTTGAATGGGA 8844174 Query 14050 AGAACGCCCTGGAGA 14064 |||| | |||||| Sbjct 8844173 GGAACAGCATGGAGA 8844159 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658495112423680