Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cynoglossus_20semilaevis_20[refseq_20GCF_5F000523025.1_202014-01-28] 29,643 sequences; 470,199,494 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq19 111 1e-19 seq14 95.1 8e-15 >seq19 Length=17744385 Score = 111 bits (122), Expect = 1e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || ||||| || || || || | |||||| ||| |||||| || |||||||| || || Sbjct 2914295 CCTCCTCTGAGGCGTAAAACAAGATGGAGGGTGGACTCCTTCTGGATGTTATAGTCAGAG 2914354 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || | || || || ||||| || |||||||| | | ||| ||||| || || Sbjct 2914355 AGAGTGCGGCCATCCTCCAGCTGTTTGCCTGCAAATATGAGTCTCTGCTGGTCTGGAGGA 2914414 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCAC 34658 | ||||||||||| |||| || | ||| ||| | |||||||| | ||| || Sbjct 2914415 ATGCCCTCCTTGTCCTGGATC-TTGGATTTCACGTTCTCTATTGTGTCGCTGGGCTCGAC 2914473 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 |||| ||| || || || || |||| || || ||||| |||||||| Sbjct 2914474 CTCCAGGGTGATGGTCTTGCCAGTTAGGGTCTTGACAAACATCTGCAT 2914521 Score = 107 bits (118), Expect = 1e-18 Identities = 163/232 (70%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || ||||| ||||| | ||| | ||| | |||| |||||| || ||||| || || || Sbjct 2912613 CCTCCTCTCAGACGGAGCACGAGATGTAAAGTGGACTCCTTCTGGATGTTGTAGTCGGAC 2912672 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || | ||||| | || ||||| ||||| || | | ||| ||||| || || Sbjct 2912673 AGAGTGCGGCCATCTTCCAACTGCTTACCAGCAAAGATGAGTCTCTGCTGGTCTGGTGGG 2912732 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAAAATTGTGTCTTCGCTCTCCACT 34659 | |||||||||||| |||||| |||| || ||||| | ||| || Sbjct 2912733 ATTCCCTCCTTGTCCTGGATCTTGGACTTTATATTCTCTATCGTGTCACTGGGCTCAACC 2912792 Query 34660 TCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTTGA 34711 |||| ||| || ||||| || || | ||||||||||| |||||||| |||| Sbjct 2912793 TCCAGGGTGATGGTTTTGCCAGTCAGGGTTTTCACAAACATCTGCATCTTGA 2912844 Score = 98.7 bits (108), Expect = 6e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | ||| || | ||| | ||| |||||| |||||| || ||||| || || || Sbjct 2912385 CCTCCCCGAAGGCGAAGCACAAGATGTAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAG 2912444 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || | || || || || || || ||||| || | |||||| ||||| || || Sbjct 2912445 AGAGTGCGACCATCCTCCAGCTGCTTTCCAGCAAAGATGAGACGCTGCTGGTCTGGTGGG 2912504 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAA-AATTGTGTCTTCGCTCTCCAC 34658 | ||||| ||||| |||||| | ||| ||| | ||| ||||| | || || Sbjct 2912505 ATGCCCTCTTTGTCCTGGATCTTG-GCTTTCACGTTCTCAATGGTGTCGCTGGGTTCAAC 2912563 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||||| ||| || || || || || | ||||||||||| | |||||| Sbjct 2912564 TTCCAAGGTGATGGTCTTGCCAGTCAGGGTTTTCACAAACACCTGCAT 2912611 Score = 98.7 bits (108), Expect = 6e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 ||| || |||||||||| || | |||||| ||| ||| || || ||||| || || || Sbjct 3999205 GCCACCCCTAAGACGCAGGACAAGATGGAGGGTGGACTCTTTCTGGATGTTGTAGTCAGA 3999146 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 || || || | ||||| || || || || ||||| || | | ||| || || || || Sbjct 3999145 GAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGGG 3999086 Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAAAATTGTGTCTTCGCTCTCCAC 34658 | ||||||||||| ||||||| |||| ||| ||||| | ||| || Sbjct 3999085 AATGCCCTCCTTGTCCTGGATCTTTGCCTTTACATTCTCAATGGTGTCACTGGGCTCTAC 3999026 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 ||| | ||| || || || || || | ||||| ||||| ||||||||| Sbjct 3999025 TTCAAGGGTAATGGTCTTGCCAGTGAGGGTTTTGACAAAGATCTGCATG 3998977 Score = 91.5 bits (100), Expect = 9e-14 Identities = 148/210 (70%), Gaps = 6/210 (3%) Strand=Plus/Plus Query 34503 ATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTG 34562 ||| || ||| ||| || || ||||| || || | || ||||| || ||||| ||||| Sbjct 2910602 ATGAAGCGTGGACTCTTTCTGGATGTTGTAGTCACACAGGGTTCGATCATCTTCCAGTTG 2910661 Query 34563 TTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTT 34622 ||| | ||||| || | |||||| || || || | | |||||||||||| ||| || Sbjct 2910662 CTTAGCAGCAAAAATGAGACGCTGCTGATCTGGAGAGATTCCCTCCTTGTCCTGGAT-TT 2910720 Query 34623 TTGTTTTAAC---GATAAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACC 34679 | | ||| || | ||| ||| ||| | ||| || |||| ||||| || || || Sbjct 2910721 TAGATTTTACATTCTTGAAACTGTCACTTGG--CTCAACCTCCAATGTTATGGTCTTCCC 2910778 Query 34680 GGTTAACGTTTTCACAAAAATCTGCATGTT 34709 ||| | || || ||||| |||||||| || Sbjct 2910779 GGTCAGGGTCTTAACAAACATCTGCATCTT 2910808 >seq14 Length=28847931 Score = 95.1 bits (104), Expect = 8e-15 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || ||||| ||||| | || | |||||| ||| |||||| || ||||| || || ||| Sbjct 12556699 CCCCCTCTCAGACGGAGAACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAA 12556758 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || | ||||| | |||||||| ||||| || | |||||| ||||| || || Sbjct 12556759 AGGGTGCGGCCATCTTCCAACTGTTTACCAGCAAAGATCAGACGCTGCTGGTCTGGGGGG 12556818 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAAAATTGTGTCTTCGCTCTCCACT 34659 | || || || || |||||| || | | ||| || || | ||||||| Sbjct 12556819 ATACCTTCTTTATCCTGGATCTTGGCCTTGACATTTTCAATGGTATCACTGGGCTCCACT 12556878 Query 34660 TCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 |||| || || || || || || | || |||||||| || ||||| Sbjct 12556879 TCCAGAGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATTTGCAT 12556925 Score = 89.7 bits (98), Expect = 3e-13 Identities = 159/232 (69%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || ||||| ||||| | || | |||||| | | ||||| || ||||| || || ||| Sbjct 12557383 CCTCCTCTCAGACGGAGAACAAGATGGAGGGGGGATTCCTTCTGGATGTTGTAGTCAGAA 12557442 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || | ||||||||||| ||||| ||||| || | |||||| || || || || Sbjct 12557443 AGGGTGCGTCCATCTTCAAGTTGCTTACCAGCAAAGATCAGACGCTGCTGATCTGGGGGG 12557502 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAAAATTGTGTCTTCGCTCTCCACT 34659 | || || || || |||||| || | | ||| || || | ||||||| Sbjct 12557503 ATACCTTCTTTTTCCTGGATCTTGGCCTTGACATTTTCAATGGTATCACGGGGCTCCACT 12557562 Query 34660 TCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTTGA 34711 |||| || || | || || || | || |||||||| || ||||| |||| Sbjct 12557563 TCCAGAGTGATGGCCTTGCCAGTCAGGGTCTTCACAAAGATTTGCATCTTGA 12557614 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314615896358819