Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cynoglossus_20semilaevis_20[refseq_20GCF_5F000523025.1_202014-01-28] 29,643 sequences; 470,199,494 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq3 120 3e-22 >seq3 Length=16251686 Score = 120 bits (132), Expect = 3e-22 Identities = 123/161 (76%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 6620 TGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAACCCC 6679 || ||||||||||| |||||||| ||||| || || |||||||| || || || | |||| Sbjct 14874790 TGGGCGATCATGTAGGTGAGCAGTGCGTAGCTGGCGATGTTGAAGGGAACTCCCAGCCCC 14874849 Query 6680 ATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTAGAATTGG 6739 ||||| | || || || || ||||| ||||| ||||| |||| |||||||| || Sbjct 14874850 ATGTCAGCTGAGCGCTGGTACAGCTGACAGGAGAGCTCGCCATCACACACGTAGAACTGA 14874909 Query 6740 CAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATC 6780 |||| || ||| || || || || ||||| || || ||||| Sbjct 14874910 CAGATGGCGTGACATGGCGGCAGGGCCATGAGGGGCAGATC 14874950 Score = 120 bits (132), Expect = 3e-22 Identities = 123/161 (76%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 34565 GATCTCCCTCTGATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGAAT 34624 ||||| || || ||||| || || || || ||| || |||| || |||||||| || Sbjct 14874950 GATCTGCCCCTCATGGCCCTGCCGCCATGTCACGCCATCTGTCAGTTCTACGTGTGTGAT 14874891 Query 34625 GGGGAGCTGTCCTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTC 34684 || ||||| ||||| ||||| || || || || | ||||||||| | || || || ||| Sbjct 14874890 GGCGAGCTCTCCTGTCAGCTGTACCAGCGCTCAGCTGACATGGGGCTGGGAGTTCCCTTC 14874831 Query 34685 AACATTGCTAGTTACGCTCTGCTCACGTACATGATCGCTCA 34725 ||||| || || ||||| |||||||| ||||||||||| || Sbjct 14874830 AACATCGCCAGCTACGCACTGCTCACCTACATGATCGCCCA 14874790 Score = 107 bits (118), Expect = 2e-18 Identities = 115/152 (76%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 6899 TACTCCGCCCCAAAGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCC 6958 ||||| || |||||||| ||||||||||| ||||| || || |||| |||||| || || Sbjct 14876095 TACTCGGCACCAAAGTGCCTCCACTGGAAACCGTACACGGGTCCCAGGTCGCCTTCTTCT 14876154 Query 6959 CGAGATGGGAACCCCCGCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTTC 7018 | || ||| || ||||||||||||| | ||||| || | ||||||||||| ||| Sbjct 14876155 CTGTCTGTGAAACCAAGCTTGTCCAGAAACGCACGAGATCCATTGGCGTCCCAGATTTTC 14876214 Query 7019 ACCCCCCGGGACGAGAGCTCCTTGGTGTTCGT 7050 |||||| || ||||| |||| ||| || Sbjct 14876215 ACCCCCTTCTCTGAAAGCTCTTTGGCGTTTGT 14876246 Score = 107 bits (118), Expect = 2e-18 Identities = 115/152 (76%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 34295 ACGAACACCAAGGAGCTCTCGTCCCGGGGGGTGAAGATCTGGGACGCTCACGGGTCTCGA 34354 || ||| |||| ||||| || ||||||||| ||||||||||| | || ||||| Sbjct 14876246 ACAAACGCCAAAGAGCTTTCAGAGAAGGGGGTGAAAATCTGGGACGCCAATGGATCTCGT 14876187 Query 34355 GACTTTCTGGACAAGCGGGGGTTCCCATCTCGGGAGGAGGGCGACTTGGGCCCGGTCTAC 34414 | ||||||||||||| || ||| || | || || |||||| |||| || || ||| Sbjct 14876186 GCGTTTCTGGACAAGCTTGGTTTCACAGACAGAGAAGAAGGCGACCTGGGACCCGTGTAC 14876127 Query 34415 GGGTTCCAGTGGAGACACTTTGGGGCGGAGTA 34446 || ||||||||||| |||||||| || ||||| Sbjct 14876126 GGTTTCCAGTGGAGGCACTTTGGTGCCGAGTA 14876095 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448096301970960