Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cynoglossus_20semilaevis_20[refseq_20GCF_5F000523025.1_202014-01-28] 29,643 sequences; 470,199,494 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq19 113 4e-20 seq14 95.1 1e-14 >seq19 Length=17744385 Score = 113 bits (124), Expect = 4e-20 Identities = 148/205 (72%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 39081 ATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTG 39140 |||||| ||| ||| || || || || || |||| || || || | || || ||||| Sbjct 2910146 ATGTAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGAGTGCGACCATCCTCTAGCTG 2910205 Query 39141 TTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTT 39200 |||||| ||||| || |||||||||||||| | || | || ||||| ||| |||||| Sbjct 2910206 TTTGCCAGCAAAGATGAGACGCTGCTGGTCTGGAGGAATGCCTTCTTTATCCTGGATTTT 2910265 Query 39201 CTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGT 39260 ||||| | | | || || || | |||| | |||| |||||| | || || || Sbjct 2910266 AGCTTTGATATTTTCAATTGTGTCACTAGGCTCCGCCTCCAGAGTGATAGTCTTGCCAGT 2910325 Query 39261 CAGCGTTTTAACAAAGATTTGCATC 39285 ||| ||||| |||||||| |||||| Sbjct 2910326 CAGGGTTTTGACAAAGATCTGCATC 2910350 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117 |||||||| | |||||| || | ||| || ||| ||| || || || ||||| || | Sbjct 2914295 CCTCCTCTGAGGCGTAAAACAAGATGGAGGGTGGACTCCTTCTGGATGTTATAGTCAGAG 2914354 Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGC 39177 || || || | || || ||||||||||| |||||||| || | ||||||||| | || Sbjct 2914355 AGAGTGCGGCCATCCTCCAGCTGTTTGCCTGCAAATATGAGTCTCTGCTGGTCTGGAGGA 2914414 Query 39178 ACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACG 39237 | || ||| |||||| ||| || ||| | || | | || ||||| | ||| || Sbjct 2914415 ATGCCCTCCTTGTCCTGGATCTTGGATTTCACGTTCTCTATTGTGTCGCTGGGCTCGACC 2914474 Query 39238 TCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATC 39285 |||| ||||| | || || || || || || ||||| || |||||| Sbjct 2914475 TCCAGGGTGATGGTCTTGCCAGTTAGGGTCTTGACAAACATCTGCATC 2914522 Score = 98.7 bits (108), Expect = 9e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117 ||||| | | ||| | ||| | |||||| ||| ||| || || || || || || | Sbjct 2912385 CCTCCCCGAAGGCGAAGCACAAGATGTAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAG 2912444 Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTC-GGTGGG 39176 || || || | || || ||||| || || ||||| || |||||||||||||| |||||| Sbjct 2912445 AGAGTGCGACCATCCTCCAGCTGCTTTCCAGCAAAGATGAGACGCTGCTGGTCTGGTGGG 2912504 Query 39177 CACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCAC 39236 | || |||||||||| ||| || ||| | || | | || ||||| | || || Sbjct 2912505 -ATGCCCTCTTTGTCCTGGATCTTGGCTTTCACGTTCTCAATGGTGTCGCTGGGTTCAAC 2912563 Query 39237 GTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 |||| ||||| | || || ||||| ||||| ||||| | ||||| Sbjct 2912564 TTCCAAGGTGATGGTCTTGCCAGTCAGGGTTTTCACAAACACCTGCAT 2912611 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117 || ||||| || |||| ||| | || || ||| ||| || || || || || || | Sbjct 2910351 CCCCCTCTCAATCGTAGCACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAG 2910410 Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGC 39177 || || || | | || | ||| || || ||||| || |||||||||||||| | ||| Sbjct 2910411 AGGGTGCGACCACCTTCCAACTGCTTACCAGCAAAGATGAGACGCTGCTGGTCTGGGGGG 2910470 Query 39178 ACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACG 39237 | | ||||| ||| |||||| || | || | | ||||| || | ||||| Sbjct 2910471 ATCCCTTCTTTATCCTGGATTTTGGCCTTAATGTTCTCTATGGTATCACTTGGTTCCACC 2910530 Query 39238 TCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 |||| ||||| |||| || || ||||| || || ||||| ||||| Sbjct 2910531 TCCAGGGTGATTGTTTTGCCAGTTAGCGTCTTCACGAAGATCTGCAT 2910577 Score = 82.4 bits (90), Expect = 7e-11 Identities = 158/233 (68%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117 || || | || ||||| || | ||| |||||| |||||| || || || || || Sbjct 2910579 CCCCCCCGTACGCGTAGGACGAGATGAAGCGTGGACTCTTTCTGGATGTTGTAGTCACAC 2910638 Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGC 39177 || ||||| || || || || || || | ||||| || ||||||||||| || | | Sbjct 2910639 AGGGTTCGATCATCTTCCAGTTGCTTAGCAGCAAAAATGAGACGCTGCTGATCTGGAGAG 2910698 Query 39178 ACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACG 39237 | | ||| |||||| |||||| ||| | || | | || || | ||| || Sbjct 2910699 ATTCCCTCCTTGTCCTGGATTTTAGATTTTACATTCTTGAAACTGTCACTTGGCTCAACC 2910758 Query 39238 TCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATCTTTAC 39290 |||| || || | || || ||||| || |||||||| || ||||||||||| Sbjct 2910759 TCCAATGTTATGGTCTTCCCGGTCAGGGTCTTAACAAACATCTGCATCTTTAC 2910811 >seq14 Length=28847931 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117 || ||||| | || | || | ||| || ||| ||| || || || || || || | | Sbjct 12556699 CCCCCTCTCAGACGGAGAACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAA 12556758 Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGC 39177 || || || | || || | |||||| || ||||| || |||||||||||||| | ||| Sbjct 12556759 AGGGTGCGGCCATCTTCCAACTGTTTACCAGCAAAGATCAGACGCTGCTGGTCTGGGGGG 12556818 Query 39178 ACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACG 39237 | | ||||| ||| ||| || |||| | | | ||||| || | |||||| Sbjct 12556819 ATACCTTCTTTATCCTGGATCTTGGCCTTGACATTTTCAATGGTATCACTGGGCTCCACT 12556878 Query 39238 TCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 |||| ||||| | || || ||||| || || |||||||||||||| Sbjct 12556879 TCCAGAGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATTTGCAT 12556925 Score = 87.8 bits (96), Expect = 2e-12 Identities = 159/233 (68%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117 |||||||| | || | || | ||| || | | || || || || || || || | | Sbjct 12557383 CCTCCTCTCAGACGGAGAACAAGATGGAGGGGGGATTCCTTCTGGATGTTGTAGTCAGAA 12557442 Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGC 39177 || || ||| | || ||||| || || || ||||| || ||||||||||| || | ||| Sbjct 12557443 AGGGTGCGTCCATCTTCAAGTTGCTTACCAGCAAAGATCAGACGCTGCTGATCTGGGGGG 12557502 Query 39178 ACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACG 39237 | | ||||| ||| ||| || |||| | | | ||||| | | |||||| Sbjct 12557503 ATACCTTCTTTTTCCTGGATCTTGGCCTTGACATTTTCAATGGTATCACGGGGCTCCACT 12557562 Query 39238 TCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATCTTTAC 39290 |||| ||||| || || ||||| || || ||||||||||||||||| || Sbjct 12557563 TCCAGAGTGATGGCCTTGCCAGTCAGGGTCTTCACAAAGATTTGCATCTTGAC 12557615 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429390416316059