Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cynoglossus_20semilaevis_20[refseq_20GCF_5F000523025.1_202014-01-28] 29,643 sequences; 470,199,494 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq19 107 1e-18 >seq19 Length=17744385 Score = 107 bits (118), Expect = 1e-18 Identities = 144/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| ||||||||||| || || || || || || || ||||| ||| Sbjct 3993473 ATGCAGATCTTCGTCAAAACCCTCACTGGCAAGACCATTACCCTTGAGGTTGAGCCCAGT 3993532 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||| ||| | || | ||||| ||||| ||||| | || || ||||| Sbjct 3993533 GACACCATTGAGAATGTGAAGGC-CAAAATCCAGGACAAGGAAGGCATTCCCCCTGATCA 3993591 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | | || ||||| |||||||| |||||||| | ||||| | || ||||| Sbjct 3993592 GCAGAGGCTGATCTTTGCTGGCAAACAGCTGGAAGATGGCCGCACCCTCTCTGACTACAA 3993651 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || ||||| ||||| Sbjct 3993652 CATCCAGAAAGAATCCAC 3993669 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| ||||||||||| || || || || || || ||||| || ||| Sbjct 3999206 ATGCAGATCTTCGTCAAAACCCTCACTGGCAAGACCATTACCCTTGAAGTAGAGCCCAGT 3999265 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| |||| | |||| ||||| ||||| ||||| | || || ||||| Sbjct 3999266 GACACCATTGAGAATGTAAAGGCCAAAATCCAGGACAAGGAAGGCATTCCCCCTGATCAG 3999325 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||| | | || ||||| ||||| || |||||||| | ||| | | || |||||| Sbjct 3999326 CAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGCTCCCTTTCTGACTACAAC 3999385 Query 23791 ATACAAAAAGAGTCCAC 23807 || || ||||||||||| Sbjct 3999386 ATCCAGAAAGAGTCCAC 3999402 Score = 100 bits (110), Expect = 2e-16 Identities = 143/199 (72%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 ||||||||| || || || |||||||| || || || ||||| || || ||||| | | Sbjct 3993244 AATGCAGATCTTTGTAAAGACCCTCACTGGCAAGACCATCACCCTTGAGGTTGAGCCAAG 3993303 Query 23670 GGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728 |||||| |||| ||| | || |||| | | ||||| ||||| | || || |||| Sbjct 3993304 TGACACTATTGAGAATGTGAAGGCAAAGA-TCCAGGACAAGGAAGGCATTCCCCCCGATC 3993362 Query 23729 AACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACA 23788 | || | | || ||||| |||||||| |||||||| | ||| | | || |||| Sbjct 3993363 AGCAAAGGCTGATCTTTGCTGGCAAACAGCTGGAAGATGGCCGCCCCCTCTCTGACTACA 3993422 Query 23789 ACATACAAAAAGAGTCCAC 23807 |||| || ||||||||||| Sbjct 3993423 ACATCCAGAAAGAGTCCAC 3993441 Score = 98.7 bits (108), Expect = 7e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || ||||||||||| || || || || || || ||||| || ||| Sbjct 3998978 ATGCAGATCTTTGTCAAAACCCTCACTGGCAAGACCATTACCCTTGAAGTAGAGCCCAGT 3999037 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| |||| | |||| ||| || ||||| || || | || || ||||| Sbjct 3999038 GACACCATTGAGAATGTAAAGGCAAAGATCCAGGACAAGGAGGGCATTCCCCCTGATCAG 3999097 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||| | | || ||||| ||||| || |||||||| | ||||| | || |||||| Sbjct 3999098 CAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCTGACTACAAC 3999157 Query 23791 ATACAAAAAGAGTCCAC 23807 || || ||||||||||| Sbjct 3999158 ATCCAGAAAGAGTCCAC 3999174 Score = 95.1 bits (104), Expect = 8e-15 Identities = 143/201 (71%), Gaps = 2/201 (1%) Strand=Plus/Minus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || |||||||| || ||||| ||||| || || || || || || | || ||||| | Sbjct 2910808 AAGATGCAGATGTTTGTTAAGACCCTGACCGGGAAGACCATAACATTGGAGGTTGAGCCA 2910749 Query 23668 ACGGACACTGTTGAAATAT-TAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGA 23726 | |||| | || || || ||||| ||||| ||||| || || | | ||||| Sbjct 2910748 AGTGACAGT-TTCAAGAATGTAAAATCTAAAATCCAGGACAAGGAGGGAATCTCTCCAGA 2910690 Query 23727 TCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTA 23786 ||| |||||| | || ||||| | || ||||||||||| || || || | | || || Sbjct 2910689 TCAGCAGCGTCTCATTTTTGCTGCTAAGCAACTGGAAGATGATCGAACCCTGTGTGACTA 2910630 Query 23787 CAACATACAAAAAGAGTCCAC 23807 |||||| || ||||||||||| Sbjct 2910629 CAACATCCAGAAAGAGTCCAC 2910609 Score = 91.5 bits (100), Expect = 1e-13 Identities = 118/163 (72%), Gaps = 0/163 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| ||||||||||| || || || || || || || ||||| ||| Sbjct 3994229 ATGCAGATCTTCGTCAAAACCCTCACTGGCAAGACCATTACCCTTGAGGTTGAGCCCAGT 3994288 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| |||| | |||| ||||| ||||| ||||| | || || ||||| Sbjct 3994289 GACACCATTGAGAATGTAAAGGCCAAAATCCAAGACAAGGAAGGCATTCCCCCTGATCAG 3994348 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCA 23773 ||| | | || ||||| |||||||| |||||||| | |||| Sbjct 3994349 CAGAGGCTGATCTTTGCTGGCAAACAGCTGGAAGATGGCCGCA 3994391 Score = 91.5 bits (100), Expect = 1e-13 Identities = 141/201 (70%), Gaps = 4/201 (2%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACC----CTCACGGGAAAAACGATCACTCTCGAAGTTGACTC 23666 ||||||||||| || || ||| ||||| || || || || || || ||||| || | Sbjct 3998746 ATGCAGATTTTTGTGAAGACCCTCACTCACTGGCAAGACCATTACCCTTGAAGTAGAGCC 3998805 Query 23667 CACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGA 23726 || ||||| |||||| |||| ||||| ||||| ||||| | || || || Sbjct 3998806 CAGTGACACCATTGAAAATGTAAAGGCTAAAATCCAGGACAAGGAAGGCATTCCCCCTGA 3998865 Query 23727 TCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTA 23786 ||| ||| | | || ||||| || || || |||||||| | || ||| | ||| || Sbjct 3998866 TCAGCAGAGGCTGATCTTTGCTGGAAAGCAGCTGGAAGATGGTCGTACTCTGTCCGACTA 3998925 Query 23787 CAACATACAAAAAGAGTCCAC 23807 |||||| |||||||| || || Sbjct 3998926 CAACATCCAAAAAGAATCTAC 3998946 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337887485898644