Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cynoglossus_20semilaevis_20[refseq_20GCF_5F000523025.1_202014-01-28] 29,643 sequences; 470,199,494 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq19 136 9e-27 seq14 111 4e-19 seq29643 107 5e-18 seq4 86.0 1e-11 >seq19 Length=17744385 Score = 136 bits (150), Expect = 9e-27 Identities = 147/195 (75%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 225495 AAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCT 225554 ||| | ||||||||| || || || ||||||||||||| ||||| |||| || ||| | Sbjct 3998968 AAGACGCAGGACAAGATGAAGCGTAGATTCTTTTTGGATGTTGTAGTCGGACAGAGTACG 3998909 Query 225555 CCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTC 225614 |||||||| |||||||| ||||| ||||| || | || || || || ||||| ||||| Sbjct 3998908 ACCATCTTCCAGCTGCTTTCCAGCAAAGATCAGCCTCTGCTGATCAGGGGGAATGCCTTC 3998849 Query 225615 CTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGT 225674 |||||| ||||| || ||| ||| ||| |||||||| || || || || | || Sbjct 3998848 CTTGTCCTGGATTTTAGCCTTTACATTTTCAATGGTGTCACTGGGCTCTACTTCAAGGGT 3998789 Query 225675 GATCGTCTTGCCCGT 225689 || |||||||| || Sbjct 3998788 AATGGTCTTGCCAGT 3998774 Score = 131 bits (144), Expect = 4e-25 Identities = 161/220 (73%), Gaps = 0/220 (0%) Strand=Plus/Minus Query 225495 AAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCT 225554 ||| | ||||||||| ||||| ||||| ||||| |||| ||||| || | | | | Sbjct 3993463 AAGACGCAGGACAAGATGGAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAGAGGGGGCG 3993404 Query 225555 CCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTC 225614 |||||||| ||||| || ||||| ||||| || | ||| || ||||| ||||| ||||| Sbjct 3993403 GCCATCTTCCAGCTGTTTGCCAGCAAAGATCAGCCTTTGCTGATCGGGGGGAATGCCTTC 3993344 Query 225615 CTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGT 225674 |||||| ||||||||| ||||||| || || ||||| | || || || | || Sbjct 3993343 CTTGTCCTGGATCTTTGCCTTCACATTCTCAATAGTGTCACTTGGCTCAACCTCAAGGGT 3993284 Query 225675 GATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATT 225714 ||| |||||||| || | || |||| || | |||||| Sbjct 3993283 GATGGTCTTGCCAGTGAGGGTCTTTACAAAGATCTGCATT 3993244 Score = 129 bits (142), Expect = 1e-24 Identities = 160/219 (73%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 225495 AAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCT 225554 ||| | ||||||||| ||||| ||||||||||| |||| ||||| || | | || | Sbjct 3993691 AAGACGCAGGACAAGATGGAGGGTGGATTCTTTCTGGATGTTGTAGTCAGAGAGGGTGCG 3993632 Query 225555 CCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTC 225614 |||||||| ||||| || ||||| ||||| || | || || || || ||||| ||||| Sbjct 3993631 GCCATCTTCCAGCTGTTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGGGAATGCCTTC 3993572 Query 225615 CTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGT 225674 |||||| ||||| || ||||||| || |||||||| || || || || | || Sbjct 3993571 CTTGTCCTGGATTTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCAACCTCAAGGGT 3993512 Query 225675 GATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || |||||||| || | ||||| | ||| | ||||| Sbjct 3993511 AATGGTCTTGCCAGTGAGGGTTTTGACGAAGATCTGCAT 3993473 Score = 118 bits (130), Expect = 3e-21 Identities = 154/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560 ||||||||| ||||| ||||| ||||| |||| ||||| || | | | | ||||| Sbjct 3999418 CAGGACAAGATGGAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAAAGGGAGCGGCCATC 3999359 Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620 ||| |||||||| ||||| ||||| || | || || || || ||||| ||||||||||| Sbjct 3999358 TTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGGGAATGCCTTCCTTGTC 3999299 Query 225621 TTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680 ||||| || ||| ||| || |||||||| || || || || | || || || Sbjct 3999298 CTGGATTTTGGCCTTTACATTCTCAATGGTGTCACTGGGCTCTACTTCAAGGGTAATGGT 3999239 Query 225681 CTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 |||||| || | ||||| | ||| | ||||| Sbjct 3999238 CTTGCCAGTGAGGGTTTTGACGAAGATCTGCAT 3999206 Score = 104 bits (114), Expect = 6e-17 Identities = 102/132 (77%), Gaps = 0/132 (0%) Strand=Plus/Minus Query 225495 AAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCT 225554 ||| | ||||||||| ||||| ||||| ||||| |||| ||||| || | || || | Sbjct 3994219 AAGACGCAGGACAAGATGGAGGGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCG 3994160 Query 225555 CCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTC 225614 |||||||| ||||| || ||||| ||||| || | || || || || ||||| ||||| Sbjct 3994159 GCCATCTTCCAGCTGTTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGGGAATGCCTTC 3994100 Query 225615 CTTGTCTTGGAT 225626 |||||| ||||| Sbjct 3994099 CTTGTCCTGGAT 3994088 Score = 100 bits (110), Expect = 7e-16 Identities = 100/130 (77%), Gaps = 0/130 (0%) Strand=Plus/Minus Query 225495 AAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCT 225554 ||| | ||||||||| || || || ||||||||||||| ||||| |||| | ||| | Sbjct 3995320 AAGACGCAGGACAAGATGAAGTGTAGATTCTTTTTGGATGTTGTAGTCGGAGAGAGTACG 3995261 Query 225555 CCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTC 225614 || ||||| ||||| || ||||| ||||| || | || || || || ||||| ||||| Sbjct 3995260 ACCGTCTTCCAGCTGTTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGGGAATGCCTTC 3995201 Query 225615 CTTGTCTTGG 225624 |||||| ||| Sbjct 3995200 CTTGTCCTGG 3995191 Score = 93.3 bits (102), Expect = 1e-13 Identities = 150/213 (70%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || ||||||||||| ||||| || || |||| ||||| || | | || | ||| || Sbjct 2910366 AGCACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGACCACCT 2910425 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || | |||||| ||||| ||||| || || || ||||| || || || ||||| || || Sbjct 2910426 TCCAACTGCTTACCAGCAAAGATGAGACGCTGCTGGTCTGGGGGGATCCCTTCTTTATCC 2910485 Query 225622 TGGATCTTTTGCTTCACAGCT-TCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680 ||||| ||| || | | | | || ||||| || | |||||| || | ||||| || Sbjct 2910486 TGGAT-TTTGGCCTTAATGTTCTCTATGGTATCACTTGGTTCCACCTCCAGGGTGATTGT 2910544 Query 225681 CTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| || | || || | ||| | ||||| Sbjct 2910545 TTTGCCAGTTAGCGTCTTCACGAAGATCTGCAT 2910577 Score = 91.5 bits (100), Expect = 4e-13 Identities = 115/158 (73%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 225556 CCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCC 225615 |||||||| ||||| || ||||| ||||| || | || || || || ||||| |||||| Sbjct 3994386 CCATCTTCCAGCTGTTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGGGAATGCCTTCC 3994327 Query 225616 TTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTG 225675 ||||||||||| || ||| ||| || |||||||| || || || || | || Sbjct 3994326 TTGTCTTGGATTTTGGCCTTTACATTCTCAATGGTGTCACTGGGCTCAACCTCAAGGGTA 3994267 Query 225676 ATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || |||||||| || | ||||| | ||| | ||||| Sbjct 3994266 ATGGTCTTGCCAGTGAGGGTTTTGACGAAGATCTGCAT 3994229 >seq14 Length=28847931 Score = 111 bits (122), Expect = 4e-19 Identities = 138/189 (73%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || ||||| ||||| | |||||| || |||| ||||| || | | || | |||||| Sbjct 12557170 AGAACAAGATGGAGGGGGGATTCCTTCTGGATGTTGTAGTCAGAAAGGGTGCGGCCATCT 12557229 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || || ||||||||||| ||||| || || || || || || || |||||||| || || Sbjct 12557230 TCAAGTTGCTTCCCAGCAAAGATCAGACGCTGCTGATCTGGGGGGATACCTTCTTTATCC 12557289 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 ||| |||| ||| ||| ||| ||||| || || ||||| || | ||||| ||| Sbjct 12557290 TGGTTCTTGGCCTTGACATTTTCAATGGTATCACCGGGCTCCACTTCCAGAGTGATGGTC 12557349 Query 225682 TTGCCCGTC 225690 ||||| ||| Sbjct 12557350 TTGCCAGTC 12557358 Score = 109 bits (120), Expect = 1e-18 Identities = 138/190 (73%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || ||||| ||||| ||||| || || |||| ||||| || | | || | |||||| Sbjct 12556942 AGAACAAGATGGAGGGTGGAGTCCTTCTGGATGTTGTAGTCAGAAAGGGTGCGTCCATCT 12557001 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || || ||||| ||||| ||||| || || | ||||| || || ||||||||||| || Sbjct 12557002 TCAAGTTGCTTACCAGCAAAGATCAGACGCCGCTGGTCTGGGGGGATACCTTCCTTATCC 12557061 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 | |||||| ||| ||| ||| ||||| || || ||||| || | ||||| | | Sbjct 12557062 TCGATCTTGGCCTTGACATTTTCAATGGTATCACGGGGCTCCACTTCCAGAGTGATGGCC 12557121 Query 225682 TTGCCCGTCA 225691 ||||| |||| Sbjct 12557122 TTGCCAGTCA 12557131 >seq29643 Length=16731 Score = 107 bits (118), Expect = 5e-18 Identities = 128/174 (74%), Gaps = 0/174 (0%) Strand=Plus/Plus Query 7551 CCAACTTTACAACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTAT 7610 |||| |||| || || ||| |||| || ||||| |||||||| |||||||| | ||||| Sbjct 6681 CCAAATTTATAATGTAATTGTTACCGCCCATGCATTTGTTATAATTTTCTTCATAGTTAT 6740 Query 7611 GCCGGTTATGATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGA 7670 || |||| || || ||||| || |||||||| | || || || ||||| || || || Sbjct 6741 ACCCATTATAATTGGGGGTTTTGGTAATTGATTAATCCCCTTGATAATTGGAGCCCCCGA 6800 Query 7671 TATGGCTTTTCCAAGGCTTAACAATATAAGTTTTTGATTACTACCGCCTTCCTT 7724 || || || || | | ||||||||||| || ||| | |||| || || || Sbjct 6801 CATAGCATTCCCCCGAATAAACAATATAAGCTTCTGACTTTTACCCCCCTCATT 6854 >seq4 Length=20010643 Score = 86.0 bits (94), Expect = 1e-11 Identities = 189/281 (67%), Gaps = 2/281 (1%) Strand=Plus/Plus Query 193502 CTGGTTGTTCTTTCGACAGATGGCGTCTTTGTAGACGATGAAGGGCATGCCCACCTCCGC 193561 ||||||| |||| | | |||||||||||||| ||| ||||| | || || | Sbjct 16960544 CTGGTTGCTCTTCCTGTTGCAGGCGTCTTTGTAGAGCATGTAGGGCGTACCGGTTTCTGT 16960603 Query 193562 TTGAGCGACGAGAATGTGATGCCAAAGTTCTTGAGCTTTCACTGT-CGTTCTGGCCTTTC 193620 || | | | ||| ||||| || | |||||| ||||| || | | || | | Sbjct 16960604 CTGCGACTCAATTATGGCGTGCCACAGCTGTTGAGCCTTCACCACGCGCT-TCACCCTCC 16960662 Query 193621 CTTCCCTCTCGTACTTTTCGTACAGTTCCTCAAAATCTTGTCCGTAGATTTCGTCGAGAC 193680 ||||| |||| ||| | ||| || ||||| || | | || || ||||| |||| Sbjct 16960663 CTTCCTTCTCATACCTAGTGTAGAGCTCCTCGAACTTCTCCCCCCAGCACTCGTCCAGAC 16960722 Query 193681 CGGGAGCTTCCTTTGGGCAAAAGAGACTCCAATCTCCATCACTTTCCACCCTCTTCATGA 193740 ||||| || | || || | ||| ||| || | ||||||||||||||||||| Sbjct 16960723 CGGGACACTCACTGGGACACATGAGTGACCAGTCCTGGTTGCTTTCCACCCTCTTCATGA 16960782 Query 193741 AGAGGTCAGATGTCCAAATGGCGTAGAAAAGTTGTCTCGCT 193781 | ||||||| |||| ||||||||||| || | || |||| Sbjct 16960783 ACAGGTCAGGGATCCACATGGCGTAGAAGAGATCTCGCGCT 16960823 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192078275532242