Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cynoglossus_20semilaevis_20[refseq_20GCF_5F000523025.1_202014-01-28] 29,643 sequences; 470,199,494 total letters Query= NC_030394.2 Length=126965 Score E Sequences producing significant alignments: (Bits) Value seq3 156 3e-33 seq22 107 2e-18 >seq3 Length=16251686 Score = 156 bits (172), Expect = 3e-33 Identities = 133/164 (81%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 29714 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGC 29773 || || |||| ||| || |||||||| ||||| || | ||||||||||||||| ||||| Sbjct 14874778 AGTCCCGTGATGTGGGCGATCATGTAGGTGAGCAGTGCGTAGCTGGCGATGTTGAAGGGA 14874837 Query 29774 ACCCCGAGCCCCATGTCCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCCGTCGCTC 29833 || || ||||||||||| |||| | |||||| ||||| || |||||||| || || | | Sbjct 14874838 ACTCCCAGCCCCATGTCAGCTGAGCGCTGGTACAGCTGACAGGAGAGCTCGCCATCACAC 14874897 Query 29834 ACGTAAAACTGACACATGGCATGGCACGGAGGAAGGGCCATGAG 29877 ||||| |||||||| ||||| || || || || ||||||||||| Sbjct 14874898 ACGTAGAACTGACAGATGGCGTGACATGGCGGCAGGGCCATGAG 14874941 Score = 136 bits (150), Expect = 3e-27 Identities = 129/162 (80%), Gaps = 2/162 (1%) Strand=Plus/Plus Query 30017 AAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAG 30076 || |||||||||||||| |||||||| ||||||||||| || ||||| |||| ||| Sbjct 14876107 AAGTGCCTCCACTGGAAACCGTACACGGGTCCCAGGTCGCCTTCTTCTCTGTCTGTGAAA 14876166 Query 30077 CCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCG 30136 || |||||||| ||| | | || || |||||||||||||| || ||||||||||| Sbjct 14876167 CCAAGCTTGTCCAGAAACGCACGAGATCCATTGGCGTCCCAGATTTTCACCCCCTTCTCT 14876226 Query 30137 GAGAGCTCTTTGGAGTTTGTGGA-CCCTCTGACGAAC-CACA 30176 || |||||||||| |||||| || |||| ||| ||| |||| Sbjct 14876227 GAAAGCTCTTTGGCGTTTGTTGATCCCTGTGATAAACACACA 14876268 Score = 87.8 bits (96), Expect = 1e-12 Identities = 72/88 (82%), Gaps = 0/88 (0%) Strand=Plus/Plus Query 29886 CTTTGGGGTTCCAGGCACACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGT 29945 ||||||||||||||||||||| |||||| | ||||||||||| ||||| ||||| || Sbjct 14875878 CTTTGGGGTTCCAGGCACACATGATGATCCTTCTGTCTTCTGGATTGTTTTTGATGGTGT 14875937 Query 29946 CCACGGCGTTTTGCAGCTGATCCACCCC 29973 | | | | |||| |||||| ||||| || Sbjct 14875938 CGATGACATTTTTCAGCTGGTCCACACC 14875965 >seq22 Length=21910988 Score = 107 bits (118), Expect = 2e-18 Identities = 83/99 (84%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 114293 CTGCTGAGGACTACGTTTAGCCTGTCTCTCAGAGGTCTATTCTTTTCGGGGATGGAGAAC 114352 ||||||||||| | ||| | |||| || || |||||||| || || |||||||| ||| Sbjct 4790178 CTGCTGAGGACAATGTTGATTCTGTTTCGCAAAGGTCTATGGTTCTCTGGGATGGAAAAC 4790237 Query 114353 CAAGTCTTTCTACCCATTATCACCACGTTCTGCTTACCT 114391 || |||||||||||||| |||||||||||||| |||||| Sbjct 4790238 CACGTCTTTCTACCCATGATCACCACGTTCTGTTTACCT 4790276 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406016463770698