Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cynoglossus_20semilaevis_20[refseq_20GCF_5F000523025.1_202014-01-28] 29,643 sequences; 470,199,494 total letters Query= NC_030842.1 Length=115510 Score E Sequences producing significant alignments: (Bits) Value seq3 158 9e-34 >seq3 Length=16251686 Score = 158 bits (174), Expect = 9e-34 Identities = 134/165 (81%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 27208 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 27267 || || |||| ||| || |||||||| ||||| || | ||||||||||||||| ||||| Sbjct 14874778 AGTCCCGTGATGTGGGCGATCATGTAGGTGAGCAGTGCGTAGCTGGCGATGTTGAAGGGA 14874837 Query 27268 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCATCGCTT 27327 || || ||||||||||| | || | |||||| |||||||| |||||||| ||||| | Sbjct 14874838 ACTCCCAGCCCCATGTCAGCTGAGCGCTGGTACAGCTGACAGGAGAGCTCGCCATCACAC 14874897 Query 27328 ACGTAAAACTGACATATGGCGTGGCACGGAGGAAGAGCCATGAGG 27372 ||||| |||||||| |||||||| || || || || ||||||||| Sbjct 14874898 ACGTAGAACTGACAGATGGCGTGACATGGCGGCAGGGCCATGAGG 14874942 Score = 149 bits (164), Expect = 5e-31 Identities = 145/184 (79%), Gaps = 2/184 (1%) Strand=Plus/Plus Query 27489 CATGTCCGTGTACTCTGCTCCGAAATGCCTCCATTGGAACCCGTACACCGGTCCCAGGTC 27548 |||||| ||||||| || || || |||||||| ||||| |||||||| ||||||||||| Sbjct 14876085 CATGTCTTTGTACTCGGCACCAAAGTGCCTCCACTGGAAACCGTACACGGGTCCCAGGTC 14876144 Query 27549 TCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTC 27608 || ||||| |||| ||| || |||||||| ||| | | || || |||||||| Sbjct 14876145 GCCTTCTTCTCTGTCTGTGAAACCAAGCTTGTCCAGAAACGCACGAGATCCATTGGCGTC 14876204 Query 27609 CCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGA-CCCTCTGACGAAC- 27666 |||||| || ||||||||||| || |||||||||| |||||| || |||| ||| ||| Sbjct 14876205 CCAGATTTTCACCCCCTTCTCTGAAAGCTCTTTGGCGTTTGTTGATCCCTGTGATAAACA 14876264 Query 27667 CACA 27670 |||| Sbjct 14876265 CACA 14876268 Score = 82.4 bits (90), Expect = 6e-11 Identities = 71/88 (81%), Gaps = 0/88 (0%) Strand=Plus/Plus Query 27380 CTTTGGGGTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGT 27439 |||||||||||||||| |||| |||||| | ||||||||||| ||||| ||||| || Sbjct 14875878 CTTTGGGGTTCCAGGCACACATGATGATCCTTCTGTCTTCTGGATTGTTTTTGATGGTGT 14875937 Query 27440 CCACGGCGTTTTGCAGCTGATCCACCCC 27467 | | | | |||| |||||| ||||| || Sbjct 14875938 CGATGACATTTTTCAGCTGGTCCACACC 14875965 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 369373706632733