Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cynoglossus_20semilaevis_20[refseq_20GCF_5F000523025.1_202014-01-28] 29,643 sequences; 470,199,494 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq4 508 8e-139 seq19 102 1e-16 >seq4 Length=20010643 Score = 508 bits (562), Expect = 8e-139 Identities = 1295/1961 (66%), Gaps = 21/1961 (1%) Strand=Plus/Plus Query 77060 ATTCTTTATATCATCATTCCACAATTTCCTCTCTGTTAAAACTCTAAGGAGATGAGGATT 77119 |||||| || || || |||||| | ||||| || | || | || |||||||| || Sbjct 16959824 ATTCTTCATTTCCTCGCTCCACAGTCCTCTCTCCGTCAGGTCTTTGAGCAGATGAGGGTT 16959883 Query 77120 AACTATTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATATGGTTC 77179 || || || || |||||||||| ||||| || ||||| || || ||||| || || || Sbjct 16959884 CACGATCTGGAACTCTCCAGACAGAACTCTGCGGGTGTAGATGTTGCTGGTGTAGGGCTC 16959943 Query 77180 CACAGATTCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGGTGCCACCAA 77239 | || || ||||| |||| || || || || || || || ||||| || |||| || Sbjct 16959944 GATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAGGCTGTGGGCATGGGGGCCATCAG 16960003 Query 77240 TAAACTATTTCTGAGACCATGTGTTCTGATTTTATCTTTTAGATATTTCCAATCCCAAAG 77299 | ||| || |||| |||||| | ||| || || || || ||| ||||| || Sbjct 16960004 CAGACTGTTCCTGACTCCATGTTTGGAGATCTTCTCCTTCAGCAGGGCCCAGTCCCACAG 16960063 Query 77300 ATCTGAAGGTACAACATCCCAAAGATCGTATTGTAGAATTCCGTTACTAGCATATGATCC 77359 |||| || ||||| | ||||| || || || || || || | || || Sbjct 16960064 GTCTGTGGGCGTCTTCTCCCACATGTCGTACTGAAGGATGCCCTTGCTGACTGGAGACCC 16960123 Query 77360 ATTATATGTTTCATAAGGTCCT---TCTGTTTCAGCTAGTTCACAACTCGCTTCCAATGC 77416 | || || ||||| || || |||| |||| || || || || || || | || Sbjct 16960124 TTCGTACGTCTCATAGGGGCCCAACTCTG---CAGCCAGCTCGCAGCTGGCCTCTAGGGC 16960180 Query 77417 TCCGTAATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCAATACTATCAAA 77476 |||| || || || ||||| || | | ||||| || |||||| || ||||| Sbjct 16960181 GGCGTAGTAGATGGTCTCGAAGATTTGGATGTTGAGCAGCTGAGCTTCAGGGCTTTCAAA 16960240 Query 77477 CGGATAATGTAAAAGAATAAAGGCATCTGCTAATCCCTGAACTCCAATACCAATAGGTCT 77536 || || | | || || ||||| ||||| | ||||| || ||||| || || || || Sbjct 16960241 AGGGAAACGCATCAGGATGAAGGCGTCTGCCAGACCCTGGACACCAATTCCTATTGGCCT 16960300 Query 77537 ATGTCTCTTATTGGAAATTTTAGCTTCTGGAATAGGATAATAATTAATGTCTATAATTTT 77596 || | ||| ||||| ||| ||| || || | |||||| || || |||||||| || || Sbjct 16960301 GTGGCGCTTGTTGGAGTTTTCAGCCTCGGGCACAGGATAGTAGTTGATGTCTATGATCTT 16960360 Query 77597 ATTGAGATTTCTAACAACTACTTTAACCACGTCCTTTAGTTTAAGAAAATCAAATCTTCC 77656 || |||||||| || | || || ||| | | ||||| || ||| | | | Sbjct 16960361 GTTCAGATTTCTGACGATCACCTTGGTCACCTGTGTCAGTTTGTTGAAGTCATAAGTCCG 16960420 Query 77657 ATCTA---TAACAAACATGTTCAAAGCTATAGATGCTAGATTACAAACTGCTACCTCATT 77713 ||| | || ||||||| | ||| || || || ||||||||||| || ||||| | Sbjct 16960421 CTCTGGGGTGACGTACATGTTGAGAGCGATGGACGCCAGATTACAAACGGCCACCTCGTC 16960480 Query 77714 AGCGTTGGCATATTGTATTATCTCGGTACATAGATTACTACATTTGATAGTGCCCAGATT 77773 | | ||| || | | || || || || || || || || ||||| |||||||| || Sbjct 16960481 TGTGCTGGTGTACTCCACGATTTCTGTGCACAGGTTGCTGCACTTGATGGTGCCCAGGTT 16960540 Query 77774 TTGTTGGTTGCTCTTTTTATTGCATGAGTCCTTATAAAGAATAAACGGAGTCCCGGTTTC 77833 || ||||||||||| | ||||| | ||| || || || || | || || |||||||| Sbjct 16960541 CTGCTGGTTGCTCTTCCTGTTGCAGGCGTCTTTGTAGAGCATGTAGGGCGTACCGGTTTC 16960600 Query 77834 AATCTGTGATTCGATAATAGATTTCCAGACGACTCTAGCTTTTATCATAGATTTGTATCG 77893 |||| || || || || | | ||| | | ||| || | || || | Sbjct 16960601 TGTCTGCGACTCAATTATGGCGTGCCACAGCTGTTGAGCCTTCACCACGCGCTTCACCCT 16960660 Query 77894 CCTCTCTCTTTCATATTGAGTATATAGCCGTTCAAATTCATCTCCCCAAACATCATCCAA 77953 || || | ||||| ||| || ||| || || | || ||||| || |||| Sbjct 16960661 CCCTTCCTTCTCATACCTAGTGTAGAGCTCCTCGAACTTCTCCCCCCAGCACTCGTCCAG 16960720 Query 77954 TCCAGGGCATTCATTTGGGCACATCAATGACCAGTCACCATCTTCCTT--AACTCGTTTC 78011 || || || ||| | || ||||| | |||||||| || || ||| || | ||| Sbjct 16960721 ACCGGGACACTCACTGGGACACATGAGTGACCAGT--CCTGGTTGCTTTCCACCCTCTTC 16960778 Query 78012 ATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGTTCTTCATTT 78071 || || || ||||| ||||| | || || |||||||| | ||| || || || || Sbjct 16960779 ATGAACAGGTCAGGGATCCACATGGCGTAGAAGAGATCTCGCGCTCTCTGCTCCTCCTTC 16960838 Query 78072 CCTGTATTCTTTTTAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATAT 78131 ||||| ||||| |||||||| || || || | | ||| ||||||| || || | || Sbjct 16960839 CCTGTGTTCTTCTTAAGATCCAGGAAGTCAAAGACGTCATAATGCCAGGGCTCCAAGTAA 16960898 Query 78132 ATTGCCATAACTCCAGGTCGTTTATTACCTCCCTGATCTATATATCTGGCGGTGTTATTA 78191 || || | ||||||| || || || || |||||||| | || | || ||||| ||| Sbjct 16960899 ATGGCAAAGGCTCCAGGACGCTTGTTGCCACCCTGATCCACGTAGCGCGCTGTGTTGTTA 16960958 Query 78192 TAAACTCTCAACATTGGAATAATACCGTTAGATGTTCCATTTGTTCCAGAAATATAACTT 78251 || ||||||| ||| || | | ||||| || |||| || || |||| || || || Sbjct 16960959 TACACTCTCAGCATGGGCACCAGGCCGTTTGAGTTTCCGTTGGTCCCAGCGATGTAGCTC 16961018 Query 78252 CCACTTGCGCGAATATTACTAATGGATATCCCTATTCCTCCTGCCATCTTAGATATTAGA 78311 ||| | | | || |||| || | || || || || ||| ||| || || || Sbjct 16961019 CCAGTGGATCTGATGCAGCTAACGGCCACACCGATGCCGCCGGCCGACTTGGAGATGAGG 16961078 Query 78312 GCGCAACGTTTCAATGTATCGTAGATACCCTCTATACTGTCATCCATCATGTTAAGAAGA 78371 ||||| |||| || || ||||| || || || ||||| ||| ||||| || || Sbjct 16961079 GCGCAGTTCTTCAGCGTGTCATAGATGCCTTCGATGCTGTCGTCCTTCATGGCCAGCAGG 16961138 Query 78372 AAACAGCTAGACATTTGATGATGAACAGTTCCTGCATTAAATAATGTCGGAGATGCATGC 78431 || ||||| |||| || | | |||||||| || || | || || || || || Sbjct 16961139 AAGCAGCTGGACAGCTGGGGCCGGTTGGTTCCTGCGTTGAAGAGCGTGGGTGACGCGTGG 16961198 Query 78432 GTAAACCATTTTTCAGAAAGTAGATTGTATGTTTCAATAGCTGATTCTATGTCCCATTGA 78491 || ||||| || || || || || ||||| || | || || | || || || | Sbjct 16961199 GTGAACCACTTCTCTGACAGCAGGTTGTAGGTATTGATGGCGGCGTCGATATCATTCTTG 16961258 Query 78492 TGAATTCCTACCGCTACACGCATCAACATATGCTGAGGTCTTTCAACCGTCTTATTATTT 78551 || || || || | || ||||| | ||| ||||| || | || || || || Sbjct 16961259 TGGATACCAACAGACACCCGCATGAGCATGTGCTGGGGACGCTCTGCCACTTTGCCGTTG 16961318 Query 78552 ATTTTCAACAAGTATGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCT 78611 || |||| || ||| || | |||| ||| || || ||||| ||||||| || |||||| Sbjct 16961319 ATCTTCAGCAGGTAGGACCTCTCCAGAGTCTTGAAGCCAAAGAAGTTGTAGGAGAAGTCT 16961378 Query 78612 CTCTCGTAAATAATAACAGAATTTAGTTTATCTTTGTATTTGGTAACAATATCCATGACA 78671 || |||||||| || | || || || ||||||| | || || |||| || Sbjct 16961379 CTGTCGTAAATGATGGCCGAGTTCAGGCGGTCTTTGTTCTCCAGAATTATGTCCA-GAGT 16961437 Query 78672 GTAGTT-GAAATAATAGGAGATCGTACACCATTTTT---AGGATTAACATAGTTAAATAA 78727 | || || || || || || || || || || || || |||||||| | | Sbjct 16961438 CTCCTTGGAGATCATGGGGGA--GT-GACGTTTGTTCAGGGGGTTGACATAGTTGTACAG 16961494 Query 78728 ATCTTCCATTACATCACTAAATAGtttttttGTTTCCTTGTGTAGATTAGATACAGCTAT 78787 |||||||| || ||| | || | || || || |||||||| || || || ||||| || Sbjct 16961495 GTCTTCCATCACTTCATTGAACACCTTCTTGGTCTCCTTGTGCAGGTTGGAGACAGCGAT 16961554 Query 78788 TCTTGCAGCTAGAATAGCATAATCAGGATGTTGTGTAGTACAAGTGGCTGCTATTTCTGC 78847 | |||||| || || ||||| || || |||| || || ||||| | || ||||| Sbjct 16961555 GCGTGCAGCCAGGATGGCATAGTCGGGGTGTTTGGTTGTGAGGGTGGCAGTGATCTCTGC 16961614 Query 78848 CGCTAAAATATCTAACTCTATAGTTGTGACCCCATTATATAGTCCTTGAATAACTTTCAT 78907 || | | || | ||| | || || || ||||| || || || || || || ||||| Sbjct 16961615 GGCCAGTGTGTCCAGCTCAACTGTGGTCACTCCATTGTACAGACCCTGGATCACCTTCAT 16961674 Query 78908 GGCGATTTTGACAGGATCTACAAACTCAGTGTTCAATCCATAACATAATTTTCTAATACG 78967 || ||| | | | ||||| || || |||| ||||| ||||| || | || ||||| Sbjct 16961675 GGTGATCTGGGCCGGATCCACGAAGTCAGAGTTCAGGCCATAGCAGAGCTTCTGGATACG 16961734 Query 78968 AGATGTGATTTTATCAAATATAACATTCTCCTTGCATCCAT 79008 ||| |||||||| ||||| || ||| ||| | || ||||| Sbjct 16961735 AGAGGTGATTTTGTCAAACATGACACGCTCTTGGCGTCCAT 16961775 >seq19 Length=17744385 Score = 102 bits (112), Expect = 1e-16 Identities = 121/164 (74%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 78744 CTAAATAGtttttttGTTTCCTTGTGTAGATTAGATACAGCTATTCTTGCAGCTAGAATA 78803 || || | ||| || || || || || || || || |||||||||| |||||||||||| Sbjct 13832062 CTGAAAACTTTCTTGGTCTCTTTATGCAGGTTGGACACAGCTATTCGTGCAGCTAGAATG 13832003 Query 78804 GCATAATCAGGATGTTGTGTAGTACAAGTGGCTGCTATTTCTGCCGCTAAAATATCTAAC 78863 || || || ||||||| || || ||||||||| | ||||| || | || ||| | Sbjct 13832002 GCGTAGTCTGGATGTTTGGTGGTGAGAGTGGCTGCCGTCTCTGCTGCCAGAACATCCAGT 13831943 Query 78864 TCTATAGTTGTGACCCCATTATATAGTCCTTGAATAACTTTCAT 78907 || | ||| ||||||||| | || || || ||||| || ||||| Sbjct 13831942 TCCACAGTGGTGACCCCACTGTAAAGACCCTGAATCACCTTCAT 13831899 Score = 93.3 bits (102), Expect = 6e-14 Identities = 90/116 (78%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 77733 ATCTCGGTACATAGATTACTACATTTGATAGTGCCCAGATTTTGTTGGTTGCTCTTTTTA 77792 ||||| || || || |||||||||||||| || ||||| || || ||||||||||| | Sbjct 13834222 ATCTCTGTGCACAGGTTACTACATTTGATGGTTCCCAGGTTCTGCTGGTTGCTCTTCCTG 13834163 Query 77793 TTGCATGAGTCCTTATAAAGAATAAACGGAGTCCCGGTTTCAATCTGTGATTCGAT 77848 ||||| | |||||| || || || | ||||| || ||||| ||||||| || || Sbjct 13834162 TTGCAGGCGTCCTTGTAGAGCATGTAGGGAGTTCCTGTTTCTGTCTGTGACTCAAT 13834107 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694411399159520