Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cynoglossus_20semilaevis_20[refseq_20GCF_5F000523025.1_202014-01-28] 29,643 sequences; 470,199,494 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq4 527 9e-145 seq19 93.3 6e-14 seq18 89.7 7e-13 >seq4 Length=20010643 Score = 527 bits (584), Expect = 9e-145 Identities = 1300/1959 (66%), Gaps = 17/1959 (1%) Strand=Plus/Plus Query 75655 ATTCTTGATCTCATCATTCCACAATTTTCTCTCGGTTAAAACTCTAAGGAGATGAGGATT 75714 |||||| || || || |||||| | |||||| || | || | || |||||||| || Sbjct 16959824 ATTCTTCATTTCCTCGCTCCACAGTCCTCTCTCCGTCAGGTCTTTGAGCAGATGAGGGTT 16959883 Query 75715 AACAATTTGAAATTCTCCAGACAATACTCTTCGAGTGTAAATATTACTGGTATATGGTTC 75774 || || || || |||||||||| ||||| || ||||| || || ||||| || || || Sbjct 16959884 CACGATCTGGAACTCTCCAGACAGAACTCTGCGGGTGTAGATGTTGCTGGTGTAGGGCTC 16959943 Query 75775 CACAGATTCATTGTTTCCCAAAATTTGAGCAGTTGAAGCAGTCGGCATAGGTGCCACCAA 75834 | || || ||||| |||| || || || || || || || ||||| || |||| || Sbjct 16959944 GATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAGGCTGTGGGCATGGGGGCCATCAG 16960003 Query 75835 TAAACTATTTCTGAGACCATGTGTTCTGATTTTATCTTTTAGATATTTCCAATCCCAAAG 75894 | ||| || |||| |||||| | ||| || || || || ||| ||||| || Sbjct 16960004 CAGACTGTTCCTGACTCCATGTTTGGAGATCTTCTCCTTCAGCAGGGCCCAGTCCCACAG 16960063 Query 75895 ATCTGATGGTACAACATCCCAGAGATCGTATTGTAGAATTCCGTTGCTAGCATATGATCC 75954 |||| || ||||| | ||||| || || || || ||||| | || || Sbjct 16960064 GTCTGTGGGCGTCTTCTCCCACATGTCGTACTGAAGGATGCCCTTGCTGACTGGAGACCC 16960123 Query 75955 ATTATATGTTTCGTAAGTCCCGTCCTTTTCAGCTAGTTCGCAACTCGCCTCTAACGCACC 76014 | || || || || | || || | |||| || ||||| || ||||||| || | Sbjct 16960124 TTCGTACGTCTCATAGGGGCCCAACTCTGCAGCCAGCTCGCAGCTGGCCTCTAGGGCGGC 16960183 Query 76015 GTAATAAATTGTTTCGAAAATCTTCTTATTAAGATCTTGCGCTTCAAGACTATCAAAAGG 76074 ||| || || || ||||| || | | || || || |||||| | || |||||||| Sbjct 16960184 GTAGTAGATGGTCTCGAAGATTTGGATGTTGAGCAGCTGAGCTTCAGGGCTTTCAAAAGG 16960243 Query 76075 ATAATGTAAAAGAATAAATGCATCTGCTAGTCCCTGAACTCCAATACCAATAGGTCTATG 76134 || | | || || || || ||||| || ||||| || ||||| || || || || || Sbjct 16960244 GAAACGCATCAGGATGAAGGCGTCTGCCAGACCCTGGACACCAATTCCTATTGGCCTGTG 16960303 Query 76135 TCTCTTATTGGAAATTTCAGCTTCTGGAATAGGGTAATAATTAATATCTATAATTTTATT 76194 | ||| ||||| ||||||| || || | ||| || || || || ||||| || || || Sbjct 16960304 GCGCTTGTTGGAGTTTTCAGCCTCGGGCACAGGATAGTAGTTGATGTCTATGATCTTGTT 16960363 Query 76195 GAGATTTCTGACAACTACTTTAACCACGTCCTTTAGTTTGAGAAAATCAAATTTTCCATC 76254 ||||||||||| | || || ||| | | |||||| || ||| | | | || Sbjct 16960364 CAGATTTCTGACGATCACCTTGGTCACCTGTGTCAGTTTGTTGAAGTCATAAGTCCGCTC 16960423 Query 76255 T---ATCACAAACATATTAAGAGCTATAGATGCTAGATTACAAACGGCTACCTCATTAGC 76311 | | || |||| || ||||| || || || |||||||||||||| ||||| | | Sbjct 16960424 TGGGGTGACGTACATGTTGAGAGCGATGGACGCCAGATTACAAACGGCCACCTCGTCTGT 16960483 Query 76312 ATTGGCATATTGTATTATCTCCGTGCATAGATTACTACACTTGATAGTTCCAAGATTTTG 76371 ||| || | | || || ||||| || || || |||||||| || || || || || Sbjct 16960484 GCTGGTGTACTCCACGATTTCTGTGCACAGGTTGCTGCACTTGATGGTGCCCAGGTTCTG 16960543 Query 76372 TTGGTTGCTCTTTTTGTTACATGAGTCCTTATAAAGAACAAACGGAGTTCCAGTTTCAAT 76431 ||||||||||| |||| || | ||| || || || | | || || || ||||| | Sbjct 16960544 CTGGTTGCTCTTCCTGTTGCAGGCGTCTTTGTAGAGCATGTAGGGCGTACCGGTTTCTGT 16960603 Query 76432 CTGTGATTCGATAATAGATTTCCAGACGACTCTAGCTTTTATTA-TAGATT-TGTATCGC 76489 ||| || || || || | | ||| | | ||| || | | | || || | Sbjct 16960604 CTGCGACTCAATTATGGCGTGCCACAGCTGTTGAGCCTTCACCACGCGCTTCACCCTCCC 16960663 Query 76490 TTCTCTCTTTCATA--TTGTGTATATAACCGTTCAAATTCATCTCCCCAAACATCATCCA 76547 ||| || | ||||| | ||||| | || || || | || ||||| || |||| Sbjct 16960664 TTC-CT-TCTCATACCTAGTGTAGAGCTCC--TCGAACTTCTCCCCCCAGCACTCGTCCA 16960719 Query 76548 AACCAGGACATTCATTCGGACACATCAATGACCACTCACCATCTTCCTT--AACCCGTTT 76605 ||| ||||| ||| | |||||||| | |||||| | || || ||| |||| || Sbjct 16960720 GACCGGGACACTCACTGGGACACATGAGTGACCAGT--CCTGGTTGCTTTCCACCCTCTT 16960777 Query 76606 CATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTACGTTCTTCATT 76665 ||| || || ||||| ||||| | || || |||||||| | ||| | || || || Sbjct 16960778 CATGAACAGGTCAGGGATCCACATGGCGTAGAAGAGATCTCGCGCTCTCTGCTCCTCCTT 16960837 Query 76666 TCCTGTATTCTTTTTAAGATCTAGGAACTCCATAATATCAGAATGCCATGGTTCTAGATA 76725 ||||| ||||| |||||||| ||||| || | | ||| ||||||| || || | || Sbjct 16960838 CCCTGTGTTCTTCTTAAGATCCAGGAAGTCAAAGACGTCATAATGCCAGGGCTCCAAGTA 16960897 Query 76726 TATCGCCATAACACCCGGTCGTTTATTACCTCCCTGATCTATATATCTGGCAGTGTTATT 76785 || || | | || || || || || || |||||||| | || | || ||||| || Sbjct 16960898 AATGGCAAAGGCTCCAGGACGCTTGTTGCCACCCTGATCCACGTAGCGCGCTGTGTTGTT 16960957 Query 76786 ATAAACTCTCAACATTGGAATAATGCCGTTAGATGTACCATTTGTTCCAGAAATATAACT 76845 ||| ||||||| ||| || | | |||||| || | || || || |||| || || || Sbjct 16960958 ATACACTCTCAGCATGGGCACCAGGCCGTTTGAGTTTCCGTTGGTCCCAGCGATGTAGCT 16961017 Query 76846 TCCACATGCACGAATATTACTAATAGATAGGCCTATTCCTCCTGCCATTTTAGAGATTAG 76905 ||| | | || |||| | | || || || || ||| || ||||| || Sbjct 16961018 CCCAGTGGATCTGATGCAGCTAACGGCCACACCGATGCCGCCGGCCGACTTGGAGATGAG 16961077 Query 76906 AGCACAGCGTTTCAATGTGTCATAGATGCCCTCTATACTATCATCCATCATGTTAAGAAG 76965 || ||| |||| |||||||||||||| || || || || ||| ||||| || || Sbjct 16961078 GGCGCAGTTCTTCAGCGTGTCATAGATGCCTTCGATGCTGTCGTCCTTCATGGCCAGCAG 16961137 Query 76966 AAAACAGCTAGACATTTGATGATGAACAGTTCCTGCATTAAACAATGTAGGAGATGCATG 77025 || ||||| |||| || | | |||||||| || || | || || || || || Sbjct 16961138 GAAGCAGCTGGACAGCTGGGGCCGGTTGGTTCCTGCGTTGAAGAGCGTGGGTGACGCGTG 16961197 Query 77026 AGTGAACCATTTTTCAGAAAGTAGATTGTATGTTTCAATAACTGCTTCTATATCCCATTG 77085 |||||||| || || || || || ||||| || | || | || || ||||| | Sbjct 16961198 GGTGAACCACTTCTCTGACAGCAGGTTGTAGGTATTGATGGCGGCGTCGATATCATTCTT 16961257 Query 77086 ATGAATTCCTACAGCGACACGCATCAACATATGCTGAGGTCGTTCTACAGTCTTATTATT 77145 || || || |||| || ||||| | ||| ||||| || || ||| | || || Sbjct 16961258 GTGGATACCAACAGACACCCGCATGAGCATGTGCTGGGGACGCTCTGCCACTTTGCCGTT 16961317 Query 77146 TATTTTCAACAAGTATGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTC 77205 || |||| || ||| || | |||| ||| || || ||||| ||||||| || ||||| Sbjct 16961318 GATCTTCAGCAGGTAGGACCTCTCCAGAGTCTTGAAGCCAAAGAAGTTGTAGGAGAAGTC 16961377 Query 77206 TCTTTCGTAAATAATAACCGAATTTAGTTTGTCCTTATATTTGGTAACAATATCCATGAC 77265 ||| |||||||| || |||| || || ||| || | | || || |||| || Sbjct 16961378 TCTGTCGTAAATGATGGCCGAGTTCAGGCGGTCTTTGTTCTCCAGAATTATGTCCA-GAG 16961436 Query 77266 AGT-GGTAGAAATAATTGGAGATCGTATTCCATTTTTAGGATTAACATAGTTAAATAAGT 77324 | | || || || || || | | || || || |||||||| | | || Sbjct 16961437 TCTCCTTGGAGATCATGGGGGAGTGACGTTTGTTCAGGGGGTTGACATAGTTGTACAGGT 16961496 Query 77325 CTTCCATTACGTCGCTAAATAGtttttttGTTTCCTTGTGTAGATTCGATACGGCTATTC 77384 ||||||| || || | || | || || || |||||||| || || || || || || | Sbjct 16961497 CTTCCATCACTTCATTGAACACCTTCTTGGTCTCCTTGTGCAGGTTGGAGACAGCGATGC 16961556 Query 77385 TAGCAGCTAGAATTGCATAGTCAGGATGTTGTGTAGTGCAGGTGGCTGCTATTTCTGCCG 77444 ||||| || || |||||||| || |||| || ||| |||||| | || ||||| | Sbjct 16961557 GTGCAGCCAGGATGGCATAGTCGGGGTGTTTGGTTGTGAGGGTGGCAGTGATCTCTGCGG 16961616 Query 77445 CTAAAGTATCTAATTCTATAGTAGTAACTCCGTTATATAGCCCTTGAATAACTTTCATGG 77504 | | || || | || | || || ||||| || || || || || || || ||||||| Sbjct 16961617 CCAGTGTGTCCAGCTCAACTGTGGTCACTCCATTGTACAGACCCTGGATCACCTTCATGG 16961676 Query 77505 CTATTTTGATAGGATCTACAAACTCGGTGTTCAAACCATAACATAATTTTCTAATACGAG 77564 || | | ||||| || || || | ||||| ||||| || | || ||||||| Sbjct 16961677 TGATCTGGGCCGGATCCACGAAGTCAGAGTTCAGGCCATAGCAGAGCTTCTGGATACGAG 16961736 Query 77565 ATGTGATTTTATCAAACATGACATTCTCCTTACATCCAT 77603 | |||||||| |||||||||||| ||| | | ||||| Sbjct 16961737 AGGTGATTTTGTCAAACATGACACGCTCTTGGCGTCCAT 16961775 >seq19 Length=17744385 Score = 93.3 bits (102), Expect = 6e-14 Identities = 90/116 (78%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 76328 ATCTCCGTGCATAGATTACTACACTTGATAGTTCCAAGATTTTGTTGGTTGCTCTTTTTG 76387 ||||| ||||| || |||||||| ||||| ||||| || || || ||||||||||| || Sbjct 13834222 ATCTCTGTGCACAGGTTACTACATTTGATGGTTCCCAGGTTCTGCTGGTTGCTCTTCCTG 13834163 Query 76388 TTACATGAGTCCTTATAAAGAACAAACGGAGTTCCAGTTTCAATCTGTGATTCGAT 76443 || || | |||||| || || | | |||||||| ||||| ||||||| || || Sbjct 13834162 TTGCAGGCGTCCTTGTAGAGCATGTAGGGAGTTCCTGTTTCTGTCTGTGACTCAAT 13834107 Score = 87.8 bits (96), Expect = 3e-12 Identities = 119/166 (72%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 77337 CGCTAAATAGtttttttGTTTCCTTGTGTAGATTCGATACGGCTATTCTAGCAGCTAGAA 77396 |||| || | ||| || || || || || || || || || ||||||| |||||||||| Sbjct 13832064 CGCTGAAAACTTTCTTGGTCTCTTTATGCAGGTTGGACACAGCTATTCGTGCAGCTAGAA 13832005 Query 77397 TTGCATAGTCAGGATGTTGTGTAGTGCAGGTGGCTGCTATTTCTGCCGCTAAAGTATCTA 77456 | || ||||| ||||||| || ||| |||||||| | ||||| || | | ||| | Sbjct 13832004 TGGCGTAGTCTGGATGTTTGGTGGTGAGAGTGGCTGCCGTCTCTGCTGCCAGAACATCCA 13831945 Query 77457 ATTCTATAGTAGTAACTCCGTTATATAGCCCTTGAATAACTTTCAT 77502 ||| | ||| || || || | || || || ||||| || ||||| Sbjct 13831944 GTTCCACAGTGGTGACCCCACTGTAAAGACCCTGAATCACCTTCAT 13831899 >seq18 Length=15207555 Score = 89.7 bits (98), Expect = 7e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 46654 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTTTG 46713 |||||||| || || | || ||||| | || |||||||||||||| || | ||| ||| Sbjct 10925816 TCATCTCTGCTGATCAGCTCATTAGAGTAGGTAAGCCCAGGCATTAGGCCTCTCTTCTTG 10925757 Query 46714 AGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACAGCCGCGAATGCG 46773 ||||| | || || ||||| || ||||| || || || || || ||||| || || || Sbjct 10925756 AGCCAGTAGATGGCAGCGAATGAACCAGAGAAAAAGATTCCCTCCACAGCAGCAAAGGCC 10925697 Query 46774 ACAAGTCTCTCTCC 46787 |||| || ||| || Sbjct 10925696 ACAATTCGCTCACC 10925683 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712670231069760