Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cynoglossus_20semilaevis_20[refseq_20GCF_5F000523025.1_202014-01-28] 29,643 sequences; 470,199,494 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq19 141 7e-29 seq14 134 1e-26 >seq19 Length=17744385 Score = 141 bits (156), Expect = 7e-29 Identities = 172/232 (74%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| |||||||||| || | ||| ||||| || ||| |||||| ||||||||||| || Sbjct 2910347 CATCCCCCCTCTCAATCGTAGCACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTC 2910406 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 | ||| ||| | | |||| |||||| || |||||||| | ||||||||| |||| Sbjct 2910407 AGAGAGGGTGCGACCACCTTCCAACTGCTTACCAGCAAAGATGAGACGCTGCTGGTCTGG 2910466 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATT 44285 || | ||||| || ||| || || || | ||||||| ||||||| || | || Sbjct 2910467 GGGGATCCCTTCTTTATCCTGGAT-TTTGGCCTTAATGTTCTCTATGGTATCACTTGGTT 2910525 Query 44286 CCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||||||||| || || || || || || || |||||||||||||| ||||| Sbjct 2910526 CCACCTCCAGGGTGATTGTTTTGCCAGTTAGCGTCTTCACGAAGATCTGCAT 2910577 Score = 116 bits (128), Expect = 3e-21 Identities = 154/211 (73%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 44128 CACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTC 44187 ||| || || || ||| |||||| ||||||||||| || | ||| ||| | || || Sbjct 2912402 CACAAGATGTAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGAGTGCGACCATCCTC 2912461 Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247 ||||||||| || |||||||| | ||||||||| |||| || | || || || ||| Sbjct 2912462 CAGCTGCTTTCCAGCAAAGATGAGACGCTGCTGGTCTGGTGGGATGCCCTCTTTGTCCTG 2912521 Query 44248 TATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCT 44306 ||||| |||| | |||| | ||||||||| || ||| || |||| || || |||| Sbjct 2912522 GATCTT-GGCTTTCACGTTCTCAATGGTGTCGCTGGGTTCAACTTCCAAGGTGATGGTCT 2912580 Query 44307 TTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 | || || ||||| ||||| || | ||||| Sbjct 2912581 TGCCAGTCAGGGTTTTCACAAACACCTGCAT 2912611 Score = 113 bits (124), Expect = 3e-20 Identities = 164/232 (71%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || || || || | || || || || || ||| || || ||||||||||| || Sbjct 3993703 CATGCCACCCCTAAGACGCAGGACAAGATGGAGGGTGGATTCTTTCTGGATGTTGTAGTC 3993644 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 | ||| ||| | || |||||||| || || |||||||||| | ||||||||| | Sbjct 3993643 AGAGAGGGTGCGGCCATCTTCCAGCTGTTTGCCAGCAAAGATCAGCCTCTGCTGATCAGG 3993584 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTC 44286 || | |||||||| ||| || || ||||| | | |||||||| || || Sbjct 3993583 GGGAATGCCTTCCTTGTCCTGGATTTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTC 3993524 Query 44287 CACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 ||||| | ||||| ||||| || |||||||| || |||||||| |||||| Sbjct 3993523 AACCTCAAGGGTAATGGTCTTGCCAGTGAGGGTTTTGACGAAGATCTGCATG 3993472 Score = 111 bits (122), Expect = 1e-19 Identities = 164/230 (71%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 44109 TTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGG 44168 |||| || ||||| | || || || || || ||| |||||| ||||||||||| |||| Sbjct 2910121 TTCCACCCCTCAGACGCAGAACGAGATGTAGAGTGGACTCCTTCTGGATGTTGTAGTCGG 2910180 Query 44169 CGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAG 44228 ||| ||| | || || ||||| || || |||||||| | ||||||||| |||| || Sbjct 2910181 AGAGAGTGCGACCATCCTCTAGCTGTTTGCCAGCAAAGATGAGACGCTGCTGGTCTGGAG 2910240 Query 44229 GCACACCTTCCTTTTCCGTTATCTTCTGCTTCAAT-GTTCCTATGGTGTCGGCGGATTCC 44287 | | ||||| || ||| || || |||| || || | || ||||| | ||| Sbjct 2910241 GAATGCCTTCTTTATCCTGGAT-TTTAGCTTTGATATTTTCAATTGTGTCACTAGGCTCC 2910299 Query 44288 ACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 |||||| || || ||||| || || ||||| || || ||||| ||||| Sbjct 2910300 GCCTCCAGAGTGATAGTCTTGCCAGTCAGGGTTTTGACAAAGATCTGCAT 2910349 Score = 111 bits (122), Expect = 1e-19 Identities = 166/233 (71%), Gaps = 2/233 (1%) Strand=Plus/Minus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || || || || | || || || || || ||| ||| || ||||||||||| || Sbjct 3999208 CATGCCACCCCTAAGACGCAGGACAAGATGGAGGGTGGACTCTTTCTGGATGTTGTAGTC 3999149 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 | ||| ||| | || ||||||||||| || |||||||||| | ||||||||| | Sbjct 3999148 AGAGAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGG 3999089 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATT 44285 || | || ||||| ||| ||||| ||| | | ||| | |||||||| || | Sbjct 3999088 GGGAATGCCCTCCTTGTCCTGGATCTT-TGCCTTTACATTCTCAATGGTGTCACTGGGCT 3999030 Query 44286 CCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 | || || | ||||| ||||| || |||||||| || || ||||| |||||| Sbjct 3999029 CTACTTCAAGGGTAATGGTCTTGCCAGTGAGGGTTTTGACAAAGATCTGCATG 3998977 Score = 109 bits (120), Expect = 4e-19 Identities = 165/232 (71%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 |||||| |||||||| | | ||| || || | ||| |||||| ||||||||||| || Sbjct 2912609 CATTCCTCCTCTCAGACGGAGCACGAGATGTAAAGTGGACTCCTTCTGGATGTTGTAGTC 2912668 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 || || ||| | || |||| |||||| || |||||||| | | |||||| |||| Sbjct 2912669 GGACAGAGTGCGGCCATCTTCCAACTGCTTACCAGCAAAGATGAGTCTCTGCTGGTCTGG 2912728 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATT 44285 || | || ||||| ||| ||||| ||| || ||| |||| ||||| || | Sbjct 2912729 TGGGATTCCCTCCTTGTCCTGGATCTTGGACTT-TATATTCTCTATCGTGTCACTGGGCT 2912787 Query 44286 CCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 | ||||||| || || || || || || ||||| ||||| || || ||||| Sbjct 2912788 CAACCTCCAGGGTGATGGTTTTGCCAGTCAGGGTTTTCACAAACATCTGCAT 2912839 Score = 109 bits (120), Expect = 4e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 44111 CCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCG 44170 || || ||||| | || || || || || ||| ||| || ||||||||||| || | Sbjct 3999432 CCTCCCCTCAGACGCAGGACAAGATGGAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAA 3999373 Query 44171 AGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGC 44230 || ||| | || ||||||||||| || |||||||||| | ||||||||| | || Sbjct 3999372 AGGGAGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGGGA 3999313 Query 44231 ACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACC 44290 | |||||||| ||| || || ||| | | | |||||||| || || || Sbjct 3999312 ATGCCTTCCTTGTCCTGGATTTTGGCCTTTACATTCTCAATGGTGTCACTGGGCTCTACT 3999253 Query 44291 TCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 || | ||||| ||||| || |||||||| || |||||||| |||||| Sbjct 3999252 TCAAGGGTAATGGTCTTGCCAGTGAGGGTTTTGACGAAGATCTGCATG 3999205 Score = 107 bits (118), Expect = 1e-18 Identities = 166/237 (70%), Gaps = 4/237 (2%) Strand=Plus/Minus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || || || || | || || || |||||||| || |||||||||||||| || Sbjct 3998980 CATGCCACCCCTAAGACGCAGGACAAGATGAAGCGTAGATTCTTTTTGGATGTTGTAGTC 3998921 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 || || || | || ||||||||||| || |||||||||| | ||||||||| | Sbjct 3998920 GGACAGAGTACGACCATCTTCCAGCTGCTTTCCAGCAAAGATCAGCCTCTGCTGATCAGG 3998861 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTC 44286 || | |||||||| ||| || || ||| | || | |||||||| || || Sbjct 3998860 GGGAATGCCTTCCTTGTCCTGGATTTTAGCCTTTACATTTTCAATGGTGTCACTGGGCTC 3998801 Query 44287 CACCTCCACCGTAATCGTCTTTCC----CGTGAGGGTCTTCACGAAGATTTGCATGA 44339 || || | ||||| ||||| || |||||||||||||| || || ||||||| Sbjct 3998800 TACTTCAAGGGTAATGGTCTTGCCAGTGAGTGAGGGTCTTCACAAAAATCTGCATGA 3998744 Score = 105 bits (116), Expect = 5e-18 Identities = 162/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || || || || | || || || || || ||| ||| || ||||||||||| || Sbjct 3993475 CATGCCACCCCTAAGACGCAGGACAAGATGGAGGGTGGACTCTTTCTGGATGTTGTAGTC 3993416 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 | ||| |||| | || |||||||| || || |||||||||| | |||||||| | Sbjct 3993415 AGAGAGGGGGCGGCCATCTTCCAGCTGTTTGCCAGCAAAGATCAGCCTTTGCTGATCGGG 3993356 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTC 44286 || | |||||||| ||| ||||| ||||| | | || ||||| | || Sbjct 3993355 GGGAATGCCTTCCTTGTCCTGGATCTTTGCCTTCACATTCTCAATAGTGTCACTTGGCTC 3993296 Query 44287 CACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||||| | || || ||||| || ||||||||||| || ||||| ||||| Sbjct 3993295 AACCTCAAGGGTGATGGTCTTGCCAGTGAGGGTCTTTACAAAGATCTGCAT 3993245 >seq14 Length=28847931 Score = 134 bits (148), Expect = 1e-26 Identities = 167/229 (73%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 44109 TTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGG 44168 ||||||||||||| | | || || || || ||| |||||| ||||||||||| || | Sbjct 12556697 TTCCCCCTCTCAGACGGAGAACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAG 12556756 Query 44169 CGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAG 44228 || ||| | || |||| ||| || || |||||||||| ||||||||| |||| | Sbjct 12556757 AAAGGGTGCGGCCATCTTCCAACTGTTTACCAGCAAAGATCAGACGCTGCTGGTCTGGGG 12556816 Query 44229 GCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCA 44288 | | |||||| || ||| ||||| ||| | || | ||||| || || |||| Sbjct 12556817 GGATACCTTCTTTATCCTGGATCTTGGCCTTGACATTTTCAATGGTATCACTGGGCTCCA 12556876 Query 44289 CCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 | |||| || || ||||| || || ||||||||||| ||||||||||| Sbjct 12556877 CTTCCAGAGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATTTGCAT 12556925 Score = 125 bits (138), Expect = 5e-24 Identities = 168/234 (72%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 44104 TTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTA 44163 || ||| || |||||||| | | || || || || | | ||||| ||||||||||| Sbjct 12557376 TTGCATCCCTCCTCTCAGACGGAGAACAAGATGGAGGGGGGATTCCTTCTGGATGTTGTA 12557435 Query 44164 ATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATC 44223 || | || ||| | || || || ||||| || |||||||||| |||||||||||| Sbjct 12557436 GTCAGAAAGGGTGCGTCCATCTTCAAGTTGCTTACCAGCAAAGATCAGACGCTGCTGATC 12557495 Query 44224 TGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGA 44283 || || | |||||| |||||| ||||| ||| | || | ||||| || || Sbjct 12557496 TGGGGGGATACCTTCTTTTTCCTGGATCTTGGCCTTGACATTTTCAATGGTATCACGGGG 12557555 Query 44284 TTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||||| |||| || || | ||| || || ||||||||||| ||||||||||| Sbjct 12557556 CTCCACTTCCAGAGTGATGGCCTTGCCAGTCAGGGTCTTCACAAAGATTTGCAT 12557609 Score = 120 bits (132), Expect = 2e-22 Identities = 165/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| ||||| ||||| | | || || || || | | ||||| ||||||||||| || Sbjct 12557151 CATCCCCCCCCTCAGACGGAGAACAAGATGGAGGGGGGATTCCTTCTGGATGTTGTAGTC 12557210 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 | || ||| | || || || |||||||| |||||||||| |||||||||||||| Sbjct 12557211 AGAAAGGGTGCGGCCATCTTCAAGTTGCTTCCCAGCAAAGATCAGACGCTGCTGATCTGG 12557270 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTC 44286 || | |||||| || ||| |||| ||| | || | ||||| || ||| || Sbjct 12557271 GGGGATACCTTCTTTATCCTGGTTCTTGGCCTTGACATTTTCAATGGTATCACCGGGCTC 12557330 Query 44287 CACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||| |||| || || ||||| || || || ||||||| ||||||||||| Sbjct 12557331 CACTTCCAGAGTGATGGTCTTGCCAGTCGGGTTCTTCACAAAGATTTGCAT 12557381 Score = 98.7 bits (108), Expect = 7e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 || || || || ||| ||||| ||||||||||| || | || ||| | || || Sbjct 12556945 ACAAGATGGAGGGTGGAGTCCTTCTGGATGTTGTAGTCAGAAAGGGTGCGTCCATCTTCA 12557004 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 || ||||| || |||||||||| |||| |||| |||| || | ||||||||| ||| Sbjct 12557005 AGTTGCTTACCAGCAAAGATCAGACGCCGCTGGTCTGGGGGGATACCTTCCTTATCCTCG 12557064 Query 44249 ATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTT 44308 ||||| ||| | || | ||||| || || ||||| |||| || || | ||| Sbjct 12557065 ATCTTGGCCTTGACATTTTCAATGGTATCACGGGGCTCCACTTCCAGAGTGATGGCCTTG 12557124 Query 44309 CCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || || ||||||||||| ||| | |||| Sbjct 12557125 CCAGTCAGGGTCTTCACAAAGCGTGGCAT 12557153 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359860344805731