Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cynoglossus_20semilaevis_20[refseq_20GCF_5F000523025.1_202014-01-28] 29,643 sequences; 470,199,494 total letters Query= NC_033176.1 Length=224064 Score E Sequences producing significant alignments: (Bits) Value seq22 154 2e-32 seq2 154 2e-32 seq14 87.8 3e-12 >seq22 Length=21910988 Score = 154 bits (170), Expect = 2e-32 Identities = 184/250 (74%), Gaps = 0/250 (0%) Strand=Plus/Minus Query 8301 ACGGACACCCCTTGACGTTGCTACAGACTAGAGACTGAATAGTTGCGCTCTTGACGATCC 8360 ||||||||| | || |||| ||| || || || |||||||| | || || || Sbjct 8032502 ACGGACACCACCTGCTGTTGAGACACACCAGCTTCTTTATAGTTGCTGTTTTAACTATGT 8032443 Query 8361 CGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGGAGCAGATGACGT 8420 ||| || |||||| ||||||||||| |||||||||||| |||| || |||||| | Sbjct 8032442 TGAAACCAGTGTCTCCTCCGAAGGTGCTTGGCTTCCAGTACTCCGGAGAACAGATGGGAT 8032383 Query 8421 TCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGCTCTCACCGAAGA 8480 | |||| |||||||| |||||||| ||||| |||| ||| | || |||||||| || | Sbjct 8032382 TACCCATCAGGCCTTTCAGGGAGAAGGGAGCGCCCATCTCAACCATACTCTCACCAAATA 8032323 Query 8481 TGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCACAGCCTCGACGT 8540 |||| || | || | || |||| || || ||||| ||| | ||||| ||| || | || Sbjct 8032322 TGGCATTAGAGCGCGTTTTCTCCAGCAGGACTCCGGGGTAGAACTCCAAAGCATCAATGT 8032263 Query 8541 CTCCGTAAAG 8550 | ||||| || Sbjct 8032262 CACCGTAGAG 8032253 Score = 140 bits (154), Expect = 5e-28 Identities = 187/257 (73%), Gaps = 10/257 (4%) Strand=Plus/Minus Query 9224 TGATGGTTTCCCCGATAATGATGAGTCGAGTGGTCTGGAACAGTTGCTCGTCACTCCATT 9283 ||||| || || || |||||||| | ||||||||||||||| |||||||| ||| Sbjct 8030205 TGATGACCTCACCAATGATGATGAGCCTAGTGGTCTGGAACAGCTGCTCGTCGTCCCAGG 8030146 Query 9284 CTGGATGTTCTTGTTTCAGAACATCGCACACCCTGTTGTGTTCCCTGAGCCAGATAGTGG 9343 ||||||||| ||| || | || || | |||||| || ||||| ||||| | |||| Sbjct 8030145 TGGGATGTTCTGCTTTAAGGATGTCACAGATCCTGTTATGCTCCCTCAGCCATAAGGTGG 8030086 Query 9344 CGTACATCATGAGCCCAGGTACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATGT 9403 ||||||| |||| ||||| | | ||||||| |||| ||||||| ||||||||| | Sbjct 8030085 CGTACATGGTGAGACCAGGCAGGATGCCAAAAACCTCCTGACCGATAGCCAGACGTTGCT 8030026 Query 9404 TTTCGGGCA---CTTCGGGAGGATAGATCATGTGCACCTGGACGTCTTTG--ACCGAGGG 9458 | | || | |||| ||| ||||||||||| ||| |||| ||| | || || || Sbjct 8030025 CTGCAGGAAAACCTTC---AGGGTAGATCATGTGTACCGGGAC--CTTGGACACAGACGG 8029971 Query 9459 GGGATACATTTCACCGT 9475 ||| || | || |||| Sbjct 8029970 GGGGTAGACGTCCCCGT 8029954 Score = 95.1 bits (104), Expect = 2e-14 Identities = 100/130 (77%), Gaps = 4/130 (3%) Strand=Plus/Minus Query 9650 CTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCCTCGCGCCAAA--TCAGTCCTAA 9707 || ||||| ||||| |||||||| |||||| | | | || | | | |||||| ||| Sbjct 8022474 CTCACCCCGTGTCCTAGTCCTTTGGTGAAGCCAG--CATCCCTTCCATGGTCAGTCTTAA 8022417 Query 9708 AAAACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGGGAT 9767 |||||||||| || ||||| ||| | | ||||||||||| || ||||| ||||| |||| Sbjct 8022416 AAAACTGGTGGGTAAAATGCTGGGCCATGAAGGCAAACATCAAATTGGTTCCCTGAGGAT 8022357 Query 9768 CGGGAGTGAA 9777 |||| |||| Sbjct 8022356 CGGGTCTGAA 8022347 >seq2 Length=20052193 Score = 154 bits (170), Expect = 2e-32 Identities = 176/234 (75%), Gaps = 2/234 (1%) Strand=Plus/Plus Query 8315 ACGTTGCTACAGACTAGAGACTGAATAGTTGCGCTCTTGACGATCCCGAACCCCACGTCT 8374 |||||| | ||||| ||| ||| | || || | |||||||| | || || || | | Sbjct 5515870 ACGTTGTTGCAGACGAGATTCTGCAAAGAGGCTGTGTTGACGATTTCAAAGCCTACTTTT 5515929 Query 8375 CCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGGAGCAGATGACGTTCGCCATGAGGCCT 8434 || || ||||||||||| ||||||||| | |||||||||||| ||| |||| || || Sbjct 5515930 CCACCAAAGGTGCTGGGTTTCCAGTACTCTGGGGAGCAGATGGGATTCCCCATCAGTCCC 5515989 Query 8435 TTGAGGGAGAACGGAGCCCCCAACTCGAGAATGCTCTCACCGAAGATGGCGTTGGGACGG 8494 || |||||||| |||||||| | ||| | ||| |||| || ||||||| || || | | Sbjct 5515990 TTCAGGGAGAAAGGAGCCCCTACCTCCACCATGGTCTCCCCAAAGATGGAATTAGGTCTG 5516049 Query 8495 GGCTTTTCCACCAAGAA-TCCGGTGTACAGCTCCACAGCCTCGACGTCTCCGTA 8547 || ||||||| |||||| || | ||| | ||| ||||| ||||| | |||||| Sbjct 5516050 GGTTTTTCCA-CAAGAAGGCCAGGGTAAAACTCTACAGCGTCGACATGTCCGTA 5516102 >seq14 Length=28847931 Score = 87.8 bits (96), Expect = 3e-12 Identities = 69/83 (83%), Gaps = 0/83 (0%) Strand=Plus/Minus Query 9701 GTCCTAAAAAACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCC 9760 ||| |||| |||||||| |||||||| || |||| || |||||||| | |||||||||| Sbjct 28027117 GTCTTAAAGAACTGGTGGGTGAAATGCTGTGCAAAGAAAGCAAACATGAGGTTGGTGCCC 28027058 Query 9761 TGGGGATCGGGAGTGAAGGTCCT 9783 ||||||||||| | || ||||| Sbjct 28027057 TGGGGATCGGGTCTAAAAGTCCT 28027035 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 716611170262720