Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cynoglossus_20semilaevis_20[refseq_20GCF_5F000523025.1_202014-01-28] 29,643 sequences; 470,199,494 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq19 141 2e-28 >seq19 Length=17744385 Score = 141 bits (156), Expect = 2e-28 Identities = 165/221 (75%), Gaps = 4/221 (2%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || || || || || || || || || || |||||||| ||||| || || ||| Sbjct 2914518 CAGATGTTTGTCAAGACCCTAACTGGCAAGACCATCACCCTGGAGGTCGA--GCCCAGCG 2914461 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 |||| || |||||||| ||| ||||| |||||||| || || || ||||| ||||||| Sbjct 2914460 ACACAATAGAGAACGTGAAATCCAAGATCCAGGACAAGGAGGGCATTCCTCCAGACCAGC 2914401 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | |||| || || || || |||||||| || ||||| | ||||| | || |||||| Sbjct 2914400 AGAGACTCATATTTGCAGGCAAACAGCTGGAGGATGGCCGCACTCTCTCTGACTATAACA 2914341 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 |||| || || || || || ||||||||||| | |||||| Sbjct 2914340 TCCAGAAGGAGTCCACCCTCCATCTTGTTTTACGCCTCAGA 2914300 Score = 140 bits (154), Expect = 8e-28 Identities = 151/200 (76%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 177930 TTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATC 177989 || |||||||| || || || || || |||||| | || || ||| | |||||||| Sbjct 2912602 TTTGTGAAAACCCTGACTGGCAAGACCATCACCTTGGAAGTTGAACCCAGCGACACCATT 2912543 Query 177990 GAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTT 178049 |||||||| ||| ||||| ||||||||||| || ||||| || |||||||| || || Sbjct 2912542 GAGAACGTGAAAGCCAAGATCCAGGACAAAGAGGGCATCCCACCAGACCAGCAGCGTCTC 2912483 Query 178050 ATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAA 178109 ||||| || ||||| ||||| || ||||| | ||||| | || || ||| |||| || Sbjct 2912482 ATCTTTGCTGGAAAGCAGCTGGAGGATGGTCGCACTCTCTCTGACTACAACATCCAGAAG 2912423 Query 178110 GAATCAACACTGCATCTTGT 178129 || || || || |||||||| Sbjct 2912422 GAGTCCACTCTACATCTTGT 2912403 Score = 123 bits (136), Expect = 6e-23 Identities = 156/212 (74%), Gaps = 8/212 (4%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACA----GGAAAAACGATCACCCTCGAGGTGGAAAGCTC 177979 || ||||| ||||| || ||||| || || || || ||||| || || || || | Sbjct 3998749 CAGATTTTTGTGAAGACCCTCACTCACTGGCAAGACCATTACCCTTGAAGTAGA--GCCC 3998806 Query 177980 AG--ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGAC 178037 || ||||||| || || || || || || |||||||| ||||| || || || || Sbjct 3998807 AGTGACACCATTGAAAATGTAAAGGCTAAAATCCAGGACAAGGAAGGCATTCCCCCTGAT 3998866 Query 178038 CAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTAT 178097 ||||| | || ||||| || ||||| ||||| |||||||| | ||||| |||| || Sbjct 3998867 CAGCAGAGGCTGATCTTTGCTGGAAAGCAGCTGGAAGATGGTCGTACTCTGTCCGACTAC 3998926 Query 178098 AACGTCCAAAAAGAATCAACACTGCATCTTGT 178129 ||| ||||||||||||| || || |||||||| Sbjct 3998927 AACATCCAAAAAGAATCTACGCTTCATCTTGT 3998958 Score = 102 bits (112), Expect = 2e-16 Identities = 94/119 (79%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 178011 CAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTC 178070 |||||||| ||||| || || || || ||||| | || ||||| || || |||||||| Sbjct 3995192 CAGGACAAGGAAGGCATTCCCCCTGATCAGCAGAGGCTGATCTTTGCTGGCAAACAGCTG 3995251 Query 178071 GAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCATCTTGT 178129 ||||| || | ||||| |||| || ||| ||||||||||||| ||||| |||||||| Sbjct 3995252 GAAGACGGTCGTACTCTCTCCGACTACAACATCCAAAAAGAATCTACACTTCATCTTGT 3995310 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203274021761742