Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyprinodon_20nevadensis_20pectoralis_20[genbank_20GCA_5F000776015.1_ 202014-11-13] 96,516 sequences; 1,011,849,000 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq4461 138 1e-27 seq4859 86.0 7e-12 seq8880 84.2 3e-11 >seq4461 Length=101207 Score = 138 bits (152), Expect = 1e-27 Identities = 298/446 (67%), Gaps = 0/446 (0%) Strand=Plus/Minus Query 54206 GCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCG 54265 ||||||||||| ||||| | || ||| || | | |||||||| || || || ||| Sbjct 13676 GCGGTGTTATTGTAAACCCGCAGCATCGGGACCAGCCCATTGGAGTTGCCGTTAGTGCCG 13617 Query 54266 GAGATATAGCTTCCACTGGCACGAATATTACTAATTGATAGACCTATCCCCCCTGCCATT 54325 | ||| ||||| ||| | | | || || | | | || ||||| || || | Sbjct 13616 GCGATGTAGCTCCCAGTCGATCTGATGCAGCTCACCGCCACGCCGATCCCGCCAGCGGAT 13557 Query 54326 TTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATC 54385 || || || | ||||| | || | || || ||||||||||| || || |||||| || Sbjct 13556 TTGGAAATGAGGGCGCACTGCTTCAGGGTGTCGTAGATGCCCTCGATGCTGTCATCCTTC 13497 Query 54386 ATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTA 54445 ||| || || || ||||| |||| || | || | || || || || || | ||| Sbjct 13496 ATGGCGAGCAGGAAGCAGCTGGACAGCTGCGGCCGGTTGGTCCCGGCGTTGAAGAGGGTT 13437 Query 54446 GGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCGATAGCTGAGTCT 54505 || || ||||| || ||||| || || || || || ||||| ||||| || || | || Sbjct 13436 GGCGAGGCGTGGGTGAACCACTTCTCCGACAGCAGGTTGTAGGTCTCAATGGCGGCATCA 13377 Query 54506 ATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACG 54565 || || | || || || || | || | ||| | ||||||||| || | || | Sbjct 13376 ATGTCTTCTCCGTGGATACCGACCGACACCCTCATGAGCATGTGCTGCGGGCGCTCGGCC 13317 Query 54566 ATCTTGTTGTTTATTTTCAGCAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTG 54625 | || ||| || ||||||| ||||| |||| ||||| || ||||| ||||| Sbjct 13316 ACTTTCCCGTTGATCTTCAGCAGATAGGAGCGCTCCAGGGTTTTGAAGCCAAAGAAGTTG 13257 Query 54626 TATGAAAAGTCTCGTTCGTAAATAAT 54651 || ||||| |||| || ||||| || Sbjct 13256 TAGGAAAAATCTCTGTCATAAATGAT 13231 >seq4859 Length=382710 Score = 86.0 bits (94), Expect = 7e-12 Identities = 95/127 (75%), Gaps = 0/127 (0%) Strand=Plus/Minus Query 24159 TCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 24218 || || || || || | ||| ||||| || || || |||||||||||||| | ||| || Sbjct 368934 TCATCCCTGCTGATGAGTTCATTGGAGAAGGTAAGGCCGGGCATTAGGCCTCTCTTCTTT 368875 Query 24219 AGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCA 24278 ||||| | |||| |||||||| || || ||||| || || ||||| || ||||| || Sbjct 368874 AGCCAGTAGATGGCAGCAAATGAGCCTGAGAAGAAGATCCCCTCTACAGCTGCAAAAGCC 368815 Query 24279 ATAAGTC 24285 | |||| Sbjct 368814 ACCAGTC 368808 >seq8880 Length=69162 Score = 84.2 bits (92), Expect = 3e-11 Identities = 124/176 (70%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 53417 GCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTATTT 53476 || ||||||||||| ||||| | ||| |||| || ||||| |||||||| | | || Sbjct 9748 GCCAGTTCACAACTGGCCTCCAGGGCAGCGTAGTAGATGGTCTCGAAGATGTGAATGTTG 9807 Query 53477 AGATCTTGTGCTTCCAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTAAT 53536 || || || ||| | || || ||||| || | ||| || || ||||| || | Sbjct 9808 AGTAACTGGGCCTCCGGACTTTCGAATGGGTAGCGCATGAGGATGAAGGCGTCGGCCAGA 9867 Query 53537 CCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGG 53592 || || |||||||| || || ||||| || | ||| || || ||||||| | ||| Sbjct 9868 CCCTGCACACCAATTCCTATTGGTCTGTGACGCTTGTTGGATTTTTCAGCCTGTGG 9923 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593005304575680