Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cyprinodon_20nevadensis_20pectoralis_20[genbank_20GCA_5F000776015.1_
202014-11-13] 96,516 sequences; 1,011,849,000 total letters
Query= NC_001611.1
Length=185578
Score E
Sequences producing significant alignments: (Bits) Value
seq4461 138 1e-27
seq4859 86.0 7e-12
seq8880 84.2 3e-11
>seq4461
Length=101207
Score = 138 bits (152), Expect = 1e-27
Identities = 298/446 (67%), Gaps = 0/446 (0%)
Strand=Plus/Minus
Query 54206 GCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCG 54265
||||||||||| ||||| | || ||| || | | |||||||| || || || |||
Sbjct 13676 GCGGTGTTATTGTAAACCCGCAGCATCGGGACCAGCCCATTGGAGTTGCCGTTAGTGCCG 13617
Query 54266 GAGATATAGCTTCCACTGGCACGAATATTACTAATTGATAGACCTATCCCCCCTGCCATT 54325
| ||| ||||| ||| | | | || || | | | || ||||| || || |
Sbjct 13616 GCGATGTAGCTCCCAGTCGATCTGATGCAGCTCACCGCCACGCCGATCCCGCCAGCGGAT 13557
Query 54326 TTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATC 54385
|| || || | ||||| | || | || || ||||||||||| || || |||||| ||
Sbjct 13556 TTGGAAATGAGGGCGCACTGCTTCAGGGTGTCGTAGATGCCCTCGATGCTGTCATCCTTC 13497
Query 54386 ATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTA 54445
||| || || || ||||| |||| || | || | || || || || || | |||
Sbjct 13496 ATGGCGAGCAGGAAGCAGCTGGACAGCTGCGGCCGGTTGGTCCCGGCGTTGAAGAGGGTT 13437
Query 54446 GGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCGATAGCTGAGTCT 54505
|| || ||||| || ||||| || || || || || ||||| ||||| || || | ||
Sbjct 13436 GGCGAGGCGTGGGTGAACCACTTCTCCGACAGCAGGTTGTAGGTCTCAATGGCGGCATCA 13377
Query 54506 ATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACG 54565
|| || | || || || || | || | ||| | ||||||||| || | || |
Sbjct 13376 ATGTCTTCTCCGTGGATACCGACCGACACCCTCATGAGCATGTGCTGCGGGCGCTCGGCC 13317
Query 54566 ATCTTGTTGTTTATTTTCAGCAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTG 54625
| || ||| || ||||||| ||||| |||| ||||| || ||||| |||||
Sbjct 13316 ACTTTCCCGTTGATCTTCAGCAGATAGGAGCGCTCCAGGGTTTTGAAGCCAAAGAAGTTG 13257
Query 54626 TATGAAAAGTCTCGTTCGTAAATAAT 54651
|| ||||| |||| || ||||| ||
Sbjct 13256 TAGGAAAAATCTCTGTCATAAATGAT 13231
>seq4859
Length=382710
Score = 86.0 bits (94), Expect = 7e-12
Identities = 95/127 (75%), Gaps = 0/127 (0%)
Strand=Plus/Minus
Query 24159 TCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 24218
|| || || || || | ||| ||||| || || || |||||||||||||| | ||| ||
Sbjct 368934 TCATCCCTGCTGATGAGTTCATTGGAGAAGGTAAGGCCGGGCATTAGGCCTCTCTTCTTT 368875
Query 24219 AGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCA 24278
||||| | |||| |||||||| || || ||||| || || ||||| || ||||| ||
Sbjct 368874 AGCCAGTAGATGGCAGCAAATGAGCCTGAGAAGAAGATCCCCTCTACAGCTGCAAAAGCC 368815
Query 24279 ATAAGTC 24285
| ||||
Sbjct 368814 ACCAGTC 368808
>seq8880
Length=69162
Score = 84.2 bits (92), Expect = 3e-11
Identities = 124/176 (70%), Gaps = 0/176 (0%)
Strand=Plus/Plus
Query 53417 GCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTATTT 53476
|| ||||||||||| ||||| | ||| |||| || ||||| |||||||| | | ||
Sbjct 9748 GCCAGTTCACAACTGGCCTCCAGGGCAGCGTAGTAGATGGTCTCGAAGATGTGAATGTTG 9807
Query 53477 AGATCTTGTGCTTCCAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTAAT 53536
|| || || ||| | || || ||||| || | ||| || || ||||| || |
Sbjct 9808 AGTAACTGGGCCTCCGGACTTTCGAATGGGTAGCGCATGAGGATGAAGGCGTCGGCCAGA 9867
Query 53537 CCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGG 53592
|| || |||||||| || || ||||| || | ||| || || ||||||| | |||
Sbjct 9868 CCCTGCACACCAATTCCTATTGGTCTGTGACGCTTGTTGGATTTTTCAGCCTGTGG 9923
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 593005304575680
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |