Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyprinodon_20nevadensis_20pectoralis_20[genbank_20GCA_5F000776015.1_ 202014-11-13] 96,516 sequences; 1,011,849,000 total letters Query= NC_001731.1 Length=190289 Score E Sequences producing significant alignments: (Bits) Value seq2204 109 7e-19 >seq2204 Length=153157 Score = 109 bits (120), Expect = 7e-19 Identities = 180/256 (70%), Gaps = 8/256 (3%) Strand=Plus/Minus Query 83143 GAACTTCTCGAAGTTCCAGGCCACGTCGTTGCGGCACACTGGAGACCAGGCAATGAGCTG 83202 ||||||||| ||||||||||| | |||||| | || |||||| |||| || |||| Sbjct 60611 GAACTTCTCAAAGTTCCAGGCTATGTCGTTTCTGCTCACTGGGCTCCAGATGATCAGCTT 60552 Query 83203 GGGGTCGCTCACGAGCGTGCTCATG--TCGTCGCTAGGCGCCGGCAGGGCCTCTCGTAGG 83260 |||||| ||| || | | | | |||||||| || || || ||| ||| Sbjct 60551 GGGGTCATTCATCAGGGA--TGAAGGCTCGTCGCTGGGGAATGGGAGCTTTTCTTTGAGG 60494 Query 83261 AAGGCGAAGAGCGGATGTGC--CCTTGCACCGTTGACCTCGCACTTCTCGAAGAGCATAA 83318 || | || || ||||| || |||| | | ||||| || |||||| | |||| || Sbjct 60493 AACACAAACAGGGGATGGGCATCCTTCC--CATTGACGTCCACCTTCTCCAGGAGCTGAA 60436 Query 83319 AGTTCGGCTCGAAGCCGTTCCCAGGACGGACGTGCTTCAGGGAAGGCAAGATCTCGGCAT 83378 | || ||||| |||||||| ||||||||||| | ||||||||| | | ||| || ||| Sbjct 60435 ACTTTGGCTCAAAGCCGTTTCCAGGACGGACATACTTCAGGGACAGGAGGATTTCTTCAT 60376 Query 83379 TCTGGGCGTTTTCCTG 83394 ||| | ||| ||||| Sbjct 60375 TCTTGCAGTTCTCCTG 60360 Score = 84.2 bits (92), Expect = 3e-11 Identities = 107/144 (74%), Gaps = 10/144 (7%) Strand=Plus/Minus Query 83391 CCTGGTGACCGAACTGGTTACACGGGAACCCAAGCACTACCAGCCCCCGAGCTCCTAGGC 83450 |||| || ||||||||||| || || | || || || || |||||| ||| ||| Sbjct 59950 CCTGATGGCCGAACTGGTTGCAGGGTACTCCCAGGACAACGAGCCCCTT-GCT----GGC 59896 Query 83451 G--CCGCT---GCAGCTCGTTCATCTGAGTGTACTCCCGGACCGTGCTACCTCAGAGGGA 83505 | ||||| | |||||||||||||| ||||| |||| |||||| | |||||||| || Sbjct 59895 GTACCGCTCGTGGAGCTCGTTCATCTGGGTGTAATCCCTGACCGTCGTGCCTCAGAGAGA 59836 Query 83506 CGCTACGTTCTCGATGAGCAAGAC 83529 ||| || ||||| || || | ||| Sbjct 59835 CGCGACATTCTCAATAAGGACGAC 59812 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 608062317100640