Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyprinodon_20nevadensis_20pectoralis_20[genbank_20GCA_5F000776015.1_ 202014-11-13] 96,516 sequences; 1,011,849,000 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq82826 147 2e-30 seq1817 104 2e-17 seq4859 93.3 4e-14 >seq82826 Length=583 Score = 147 bits (162), Expect = 2e-30 Identities = 114/136 (84%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 117032 GGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCC 117091 || ||||| ||||||| ||||| ||||| ||||| ||||||| || ||| || ||| Sbjct 129 GGAGAGCGTGTGGTGGCGTTCGCCGCCGTGGAGGGAATCTTCTTCTCTGGCTCCTTTGCC 188 Query 117092 GCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTC 117151 ||||| || ||||| |||||||||||||| |||||||||||||| ||||||||||||||| Sbjct 189 GCCATCTTCTGGCTGAAGAAACGCGGCCTGATGCCCGGCCTGACCTTCAGCAACGAGCTC 248 Query 117152 ATCTCCAGGGACGAGG 117167 ||| ||| ||||||| Sbjct 249 ATCAGCAGAGACGAGG 264 >seq1817 Length=35134 Score = 104 bits (114), Expect = 2e-17 Identities = 100/123 (81%), Gaps = 4/123 (3%) Strand=Plus/Minus Query 116685 AGGTGGACCTGTCCAAGGACACG-AGCGACTGGGAG-CGCTTGAACGACAACGAGCGCCA 116742 ||||||| |||||||| ||| | ||| |||||||| | || || | | |||||| || Sbjct 4215 AGGTGGATCTGTCCAAAGACCTGCAGC-ACTGGGAGTCTCTCAAATCAGA-CGAGCGTCA 4158 Query 116743 TTTCATCAAGCACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCT 116802 |||||| | |||| |||| || ||||||||||||||||||||||||||||||||||| Sbjct 4157 CTTCATCTCGTACGTTTTGGCGTTCTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCT 4098 Query 116803 GGT 116805 ||| Sbjct 4097 GGT 4095 >seq4859 Length=382710 Score = 93.3 bits (102), Expect = 4e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 117032 GGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCC 117091 || ||||| |||||||| || || || || ||||| ||||||| || ||| || || Sbjct 368801 GGGGAGCGACTGGTGGCTTTTGCAGCTGTAGAGGGGATCTTCTTCTCAGGCTCATTTGCT 368860 Query 117092 GCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTC 117151 ||||| | ||||| ||||| | ||||| ||||||||||| || ||| ||| || ||| Sbjct 368861 GCCATCTACTGGCTAAAGAAGAGAGGCCTAATGCCCGGCCTTACCTTCTCCAATGAACTC 368920 Query 117152 ATCTCCAGGGACGA 117165 ||| |||||| || Sbjct 368921 ATCAGCAGGGATGA 368934 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 514597613796160