Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cyprinodon_20nevadensis_20pectoralis_20[genbank_20GCA_5F000776015.1_
202014-11-13] 96,516 sequences; 1,011,849,000 total letters
Query= NC_001973.1
Length=161046
Score E
Sequences producing significant alignments: (Bits) Value
seq82826 147 2e-30
seq1817 104 2e-17
seq4859 93.3 4e-14
>seq82826
Length=583
Score = 147 bits (162), Expect = 2e-30
Identities = 114/136 (84%), Gaps = 0/136 (0%)
Strand=Plus/Plus
Query 117032 GGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCC 117091
|| ||||| ||||||| ||||| ||||| ||||| ||||||| || ||| || |||
Sbjct 129 GGAGAGCGTGTGGTGGCGTTCGCCGCCGTGGAGGGAATCTTCTTCTCTGGCTCCTTTGCC 188
Query 117092 GCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTC 117151
||||| || ||||| |||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 189 GCCATCTTCTGGCTGAAGAAACGCGGCCTGATGCCCGGCCTGACCTTCAGCAACGAGCTC 248
Query 117152 ATCTCCAGGGACGAGG 117167
||| ||| |||||||
Sbjct 249 ATCAGCAGAGACGAGG 264
>seq1817
Length=35134
Score = 104 bits (114), Expect = 2e-17
Identities = 100/123 (81%), Gaps = 4/123 (3%)
Strand=Plus/Minus
Query 116685 AGGTGGACCTGTCCAAGGACACG-AGCGACTGGGAG-CGCTTGAACGACAACGAGCGCCA 116742
||||||| |||||||| ||| | ||| |||||||| | || || | | |||||| ||
Sbjct 4215 AGGTGGATCTGTCCAAAGACCTGCAGC-ACTGGGAGTCTCTCAAATCAGA-CGAGCGTCA 4158
Query 116743 TTTCATCAAGCACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCT 116802
|||||| | |||| |||| || |||||||||||||||||||||||||||||||||||
Sbjct 4157 CTTCATCTCGTACGTTTTGGCGTTCTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCT 4098
Query 116803 GGT 116805
|||
Sbjct 4097 GGT 4095
>seq4859
Length=382710
Score = 93.3 bits (102), Expect = 4e-14
Identities = 101/134 (75%), Gaps = 0/134 (0%)
Strand=Plus/Plus
Query 117032 GGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCC 117091
|| ||||| |||||||| || || || || ||||| ||||||| || ||| || ||
Sbjct 368801 GGGGAGCGACTGGTGGCTTTTGCAGCTGTAGAGGGGATCTTCTTCTCAGGCTCATTTGCT 368860
Query 117092 GCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTC 117151
||||| | ||||| ||||| | ||||| ||||||||||| || ||| ||| || |||
Sbjct 368861 GCCATCTACTGGCTAAAGAAGAGAGGCCTAATGCCCGGCCTTACCTTCTCCAATGAACTC 368920
Query 117152 ATCTCCAGGGACGA 117165
||| |||||| ||
Sbjct 368921 ATCAGCAGGGATGA 368934
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 514597613796160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |