Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyprinodon_20nevadensis_20pectoralis_20[genbank_20GCA_5F000776015.1_ 202014-11-13] 96,516 sequences; 1,011,849,000 total letters Query= NC_002188.1 Length=288539 Score E Sequences producing significant alignments: (Bits) Value seq10680 102 2e-16 >seq10680 Length=108585 Score = 102 bits (112), Expect = 2e-16 Identities = 124/169 (73%), Gaps = 0/169 (0%) Strand=Plus/Plus Query 51887 TAGCCAGAGCATTATGGTTGTACTATATATCCAAAGGGATAGAATACTTGGATACGGTAT 51946 |||| |||| | |||| ||| | || |||||||| || || ||| |||| || |||| Sbjct 28777 TAGCAGGAGCTCTCTGGTGGTATTTCATTTCCAAAGGCATTGAGTACCTGGACACAGTAT 28836 Query 51947 TTTTCATACTTAGGAAAAAATTTAATCAGGTTAGTTTTCTACACGTATATCATCATTTTA 52006 ||||||| || |||||||| || || ||||||| || || ||||| || || || | | Sbjct 28837 TTTTCATTCTGAGGAAAAAGTTCAACCAGGTTACCTTCCTGCACGTCTACCACCACTGCA 28896 Query 52007 CTATGTTTACTCTAGGATGGATAGGTATTAAATGGTTTGCTGGAGGTCA 52055 | ||||| || || | ||||| || || || ||| | || ||||| || Sbjct 28897 CCATGTTCACGCTCTGGTGGATCGGCATCAAGTGGGTGGCAGGAGGACA 28945 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 922083009220640