Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyprinodon_20nevadensis_20pectoralis_20[genbank_20GCA_5F000776015.1_ 202014-11-13] 96,516 sequences; 1,011,849,000 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq60294 95.1 1e-14 seq27000 95.1 1e-14 seq34451 91.5 2e-13 seq18185 91.5 2e-13 seq47406 89.7 6e-13 seq5673 86.0 7e-12 seq8353 82.4 9e-11 seq406 82.4 9e-11 >seq60294 Length=274 Score = 95.1 bits (104), Expect = 1e-14 Identities = 68/77 (88%), Gaps = 1/77 (1%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || |||||||||| ||||||||||||| |||||||||||| ||| ||||||||| Sbjct 16 CTCCCCGTCAGGGAATCGTACCCTGGTCTCCCACGTGACAGGCGGGGATAATCACCACTA 75 Query 60126 TACTACCGAGGA-TTGA 60141 ||||| |||||| |||| Sbjct 76 TACTAACGAGGACTTGA 92 >seq27000 Length=4504 Score = 95.1 bits (104), Expect = 1e-14 Identities = 69/80 (86%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 60058 AAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACT 60117 ||| |||||||| || | |||||| |||||| |||||||||||||| |||||| ||||| Sbjct 1968 AAATTTTTCTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGATAGGCGGGGATACT 1909 Query 60118 CACCACTATACTACCGAGGA 60137 |||||||||||| |||||| Sbjct 1908 CACCACTATACTGACGAGGA 1889 >seq34451 Length=11587 Score = 91.5 bits (100), Expect = 2e-13 Identities = 59/65 (91%), Gaps = 0/65 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || ||||||||||||||||||||||| ||||||||||| | ||||||||||||| Sbjct 9755 CTCCCCGTCAGGGAATCGAACCCTGGTCTCCTGCGTGACAGGCAGGGATACTCACCACTA 9814 Query 60126 TACTA 60130 ||||| Sbjct 9815 TACTA 9819 >seq18185 Length=137282 Score = 91.5 bits (100), Expect = 2e-13 Identities = 67/77 (87%), Gaps = 1/77 (1%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || |||||||||||||||||||||| |||||||||||| | ||||||||||||| Sbjct 65513 CTCCCCGTCAGGGAATCGAACCCTGGTCTCTCGCGTGACAGGCAGGGATACTCACCACTA 65572 Query 60126 TACTACCGAGGA-TTGA 60141 || || ||| || |||| Sbjct 65573 TAGTAACGAAGACTTGA 65589 >seq47406 Length=221 Score = 89.7 bits (98), Expect = 6e-13 Identities = 68/79 (86%), Gaps = 1/79 (1%) Strand=Plus/Minus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| || ||||||||| ||||||||| ||| ||||||||||| | ||||| |||||| Sbjct 160 TCTCCCCGTCAGGGAATCAAACCCTGGTATCCTGCGTGACAGGCAGGGATACTTACCACT 101 Query 60125 ATACTACCGAGGA-TTGAA 60142 |||||| |||||| ||||| Sbjct 100 ATACTAACGAGGACTTGAA 82 >seq5673 Length=32006 Score = 86.0 bits (94), Expect = 7e-12 Identities = 58/65 (89%), Gaps = 0/65 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || ||||||||| ||||||||||||| ||||||||||| | ||||||||||||| Sbjct 29823 CTCCCCGTCAGGGAATCAAACCCTGGTCTCCTGCGTGACAGGCAGTGATACTCACCACTA 29764 Query 60126 TACTA 60130 ||||| Sbjct 29763 TACTA 29759 >seq8353 Length=21746 Score = 82.4 bits (90), Expect = 9e-11 Identities = 62/72 (86%), Gaps = 1/72 (1%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 ||||||| | ||||||| |||| |||||||||||| ||||||||| |||||| |||||| Sbjct 12842 CTCCTCGTCTGGGAATCAAACCTTGGTCTCCCGCG-GACAGGCGGGGATACTCCCCACTA 12784 Query 60126 TACTACCGAGGA 60137 | ||| |||||| Sbjct 12783 TGCTAACGAGGA 12772 >seq406 Length=352436 Score = 82.4 bits (90), Expect = 9e-11 Identities = 57/65 (88%), Gaps = 0/65 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| | |||||||||||||||||||||||| ||||||||| || |||||| |||||| Sbjct 84459 CTCCCGGTCAGGGAATCGAACCCTGGTCTCCCACGTGACAGGAGGGGATACTCTCCACTA 84400 Query 60126 TACTA 60130 ||||| Sbjct 84399 TACTA 84395 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571127730656480