Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyprinodon_20nevadensis_20pectoralis_20[genbank_20GCA_5F000776015.1_ 202014-11-13] 96,516 sequences; 1,011,849,000 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq4461 114 3e-20 >seq4461 Length=101207 Score = 114 bits (126), Expect = 3e-20 Identities = 437/682 (64%), Gaps = 21/682 (3%) Strand=Plus/Plus Query 248461 TTCGACAAAATCTCGGCGCGCATCAAGAAGCTCTGTTATGGTCTGGAACCCAACTTCGTC 248520 ||||| |||||| | | || ||| |||||||||| || |||||| | | ||||||| Sbjct 12909 TTCGATAAAATCACCTCCCGGATCCAGAAGCTCTGCTACGGTCTGAATGCAGACTTCGTG 12968 Query 248521 GATCATGTGGCC---ATCGCCCAGAAAGTTATTTCGGGCGTCTACACCGGAGTAACAACG 248577 |||| |||| ||| || ||| || || ||| | |||| ||| || || || Sbjct 12969 GATCC---GGCCCAGATCACCATGAAGGTGATCCAGGGTTTGTACAGCGGCGTCACCACC 13025 Query 248578 ACAGAACTGGACACCTTAGCTGCGGAGACGGCGGCGTACATGGCGATTGCACACCCCGAC 248637 || || ||||| |||| ||||||| |||| | || ||| ||||| ||| Sbjct 13026 GTGGAGCTAGACACGCTAGCGGCGGAGATCACGGCCACCCTGACGACCAAGCACCCGGAC 13085 Query 248638 TACTCGCTGCTGGCCGGGAGGATCGCCGTCTCAAGGCTTCACAAAGAAACGAAAGAGTCG 248697 ||| | | || |||| ||||| |||||||| | |||||||| || || || Sbjct 13086 TACGCCATCCTCGCCGCCAGGATTGCCGTCTCCAACCTTCACAAGGAGACCAAN------ 13139 Query 248698 TTCGTCGAAACCATGGCTGACCTACATGCCTATGGG--ATGGTCGCCGATGACGTCCACA 248755 |||| |||| | |||| | | | ||| | ||| || || | | || | Sbjct 13140 --CGTC--AACCCT--CTGAACAA-ACGCCACTCCCCCATGATCTCCAAGCAGACCCTCG 13192 Query 248756 CCGTCATTCAGGACAACGCGCACCTCCTGGACGGCGCGATTGACTACGGCAAAGATTTGG 248815 | || ||| ||| ||| ||| ||| | | | || || | || |||||| Sbjct 13193 ACATCGTTCTGGAGAACAAAGACCGCCTCAATTCCTCCATCATTTATGACAGAGATTTTT 13252 Query 248816 AGTACGATTTCTTTGCTTTCAAAACGCTGGAGAAATCGTATCTCCTCAAAATTGATGGCA 248875 ||| | ||||||| |||||||| |||||| || ||||| || || || | || | Sbjct 13253 CCTACAACTTCTTTGGCTTCAAAACCCTGGAGCGCTCCTATCTGCTGAAGATCAACGGGA 13312 Query 248876 AGATCGTGGAACGAATTCAGCACATGTTGATGCGAGTGGCTGTCGGGATTCACAAGGATG 248935 | | | || || ||||||||| | ||| | ||| | ||||| || ||| || | Sbjct 13313 AAGTGGCCGAGCGCCCGCAGCACATGCTCATGAGGGTGTCGGTCGGTATCCACGGAGAAG 13372 Query 248936 ACATAGAGAGCGTGCTCGAGACGTACACCGGAATGAGTGAACGCTGGATGACACATGCCA 248995 |||| || || | ||||| |||| | || || ||| | || || ||| Sbjct 13373 ACATTGATGCCGCCATTGAGACCTACAACCTGCTGTCGGAGAAGTGGTTCACCCACGCCT 13432 Query 248996 CACCGACGCTCTTCAACGCCGGTACCGTCAACAATCAGCTGAGCTCGTGCTTTCTTCTTG 249055 | || || |||||||||||||| ||| | |||||| | ||||| || || | Sbjct 13433 CGCCAACCCTCTTCAACGCCGGGACCAACCGGCCGCAGCTGTCCAGCTGCTTCCTGCTCG 13492 Query 249056 CCATGCAAGACGACTCTGTCGACGGCATTTATGACACGCTTAAACAGACGGCGAAGATTT 249115 ||||| | || ||| |||| ||||| || ||||| || || ||| || |||| Sbjct 13493 CCATGAAGGATGACAGCATCGAGGGCATCTACGACACCCTGAAGCAGTGCGCCCTCATTT 13552 Query 249116 CTAAATTCGCGGGCGGAATCGG 249137 | |||| ||| ||||| ||||| Sbjct 13553 CCAAATCCGCTGGCGGGATCGG 13574 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1072438568389888