Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cyprinodon_20nevadensis_20pectoralis_20[genbank_20GCA_5F000776015.1_
202014-11-13] 96,516 sequences; 1,011,849,000 total letters
Query= NC_002687.1
Length=335593
Score E
Sequences producing significant alignments: (Bits) Value
seq4461 114 3e-20
>seq4461
Length=101207
Score = 114 bits (126), Expect = 3e-20
Identities = 437/682 (64%), Gaps = 21/682 (3%)
Strand=Plus/Plus
Query 248461 TTCGACAAAATCTCGGCGCGCATCAAGAAGCTCTGTTATGGTCTGGAACCCAACTTCGTC 248520
||||| |||||| | | || ||| |||||||||| || |||||| | | |||||||
Sbjct 12909 TTCGATAAAATCACCTCCCGGATCCAGAAGCTCTGCTACGGTCTGAATGCAGACTTCGTG 12968
Query 248521 GATCATGTGGCC---ATCGCCCAGAAAGTTATTTCGGGCGTCTACACCGGAGTAACAACG 248577
|||| |||| ||| || ||| || || ||| | |||| ||| || || ||
Sbjct 12969 GATCC---GGCCCAGATCACCATGAAGGTGATCCAGGGTTTGTACAGCGGCGTCACCACC 13025
Query 248578 ACAGAACTGGACACCTTAGCTGCGGAGACGGCGGCGTACATGGCGATTGCACACCCCGAC 248637
|| || ||||| |||| ||||||| |||| | || ||| ||||| |||
Sbjct 13026 GTGGAGCTAGACACGCTAGCGGCGGAGATCACGGCCACCCTGACGACCAAGCACCCGGAC 13085
Query 248638 TACTCGCTGCTGGCCGGGAGGATCGCCGTCTCAAGGCTTCACAAAGAAACGAAAGAGTCG 248697
||| | | || |||| ||||| |||||||| | |||||||| || || ||
Sbjct 13086 TACGCCATCCTCGCCGCCAGGATTGCCGTCTCCAACCTTCACAAGGAGACCAAN------ 13139
Query 248698 TTCGTCGAAACCATGGCTGACCTACATGCCTATGGG--ATGGTCGCCGATGACGTCCACA 248755
|||| |||| | |||| | | | ||| | ||| || || | | || |
Sbjct 13140 --CGTC--AACCCT--CTGAACAA-ACGCCACTCCCCCATGATCTCCAAGCAGACCCTCG 13192
Query 248756 CCGTCATTCAGGACAACGCGCACCTCCTGGACGGCGCGATTGACTACGGCAAAGATTTGG 248815
| || ||| ||| ||| ||| ||| | | | || || | || ||||||
Sbjct 13193 ACATCGTTCTGGAGAACAAAGACCGCCTCAATTCCTCCATCATTTATGACAGAGATTTTT 13252
Query 248816 AGTACGATTTCTTTGCTTTCAAAACGCTGGAGAAATCGTATCTCCTCAAAATTGATGGCA 248875
||| | ||||||| |||||||| |||||| || ||||| || || || | || |
Sbjct 13253 CCTACAACTTCTTTGGCTTCAAAACCCTGGAGCGCTCCTATCTGCTGAAGATCAACGGGA 13312
Query 248876 AGATCGTGGAACGAATTCAGCACATGTTGATGCGAGTGGCTGTCGGGATTCACAAGGATG 248935
| | | || || ||||||||| | ||| | ||| | ||||| || ||| || |
Sbjct 13313 AAGTGGCCGAGCGCCCGCAGCACATGCTCATGAGGGTGTCGGTCGGTATCCACGGAGAAG 13372
Query 248936 ACATAGAGAGCGTGCTCGAGACGTACACCGGAATGAGTGAACGCTGGATGACACATGCCA 248995
|||| || || | ||||| |||| | || || ||| | || || |||
Sbjct 13373 ACATTGATGCCGCCATTGAGACCTACAACCTGCTGTCGGAGAAGTGGTTCACCCACGCCT 13432
Query 248996 CACCGACGCTCTTCAACGCCGGTACCGTCAACAATCAGCTGAGCTCGTGCTTTCTTCTTG 249055
| || || |||||||||||||| ||| | |||||| | ||||| || || |
Sbjct 13433 CGCCAACCCTCTTCAACGCCGGGACCAACCGGCCGCAGCTGTCCAGCTGCTTCCTGCTCG 13492
Query 249056 CCATGCAAGACGACTCTGTCGACGGCATTTATGACACGCTTAAACAGACGGCGAAGATTT 249115
||||| | || ||| |||| ||||| || ||||| || || ||| || ||||
Sbjct 13493 CCATGAAGGATGACAGCATCGAGGGCATCTACGACACCCTGAAGCAGTGCGCCCTCATTT 13552
Query 249116 CTAAATTCGCGGGCGGAATCGG 249137
| |||| ||| ||||| |||||
Sbjct 13553 CCAAATCCGCTGGCGGGATCGG 13574
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1072438568389888
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |