Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cyprinodon_20nevadensis_20pectoralis_20[genbank_20GCA_5F000776015.1_
202014-11-13] 96,516 sequences; 1,011,849,000 total letters
Query= NC_003102.1
Length=139342
Score E
Sequences producing significant alignments: (Bits) Value
seq4461 199 4e-46
seq82826 116 3e-21
seq8880 93.3 4e-14
>seq4461
Length=101207
Score = 199 bits (220), Expect = 4e-46
Identities = 462/697 (66%), Gaps = 26/697 (4%)
Strand=Plus/Minus
Query 22514 TCGAAAGATTCATTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGCATCGGCGCCAAC 22573
|||| || || ||||| ||||| ||||| ||||| || || || ||||| || |||| |
Sbjct 14615 TCGATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAGGCCGTGGGCATGGGGGCCAGC 14556
Query 22574 AGTAGCGAGTTTCTCAAGCCGTGCTTTGAAATTTTACTCTTGAGCATCGACCAGTCCCAC 22633
|| || ||| |||| |||||| || | || || ||| |||| | ||||||||||
Sbjct 14555 AGCAGGCTGTTCCTCACGCCGTGTTTGGCGATCTTCTCCTTCAGCAGCTTCCAGTCCCAC 14496
Query 22634 AGATCGGACGGCGTCACATTGTCCCACATATCGTATTGCAACACGCCGCGACTCGCCGGG 22693
| |||| ||| ||| || |||||||| ||||| || | | ||| || | ||
Sbjct 14495 ATGTCGGTCGGAGTC---TTCTCCCACATGTCGTACTGGAGGATGCCTTTGCTGACAGGT 14439
Query 22694 CTGCCTTCGTACGTTTCGTACGGA-CCATATATCGCGGCAAGTTCGCAGCTCGCCTCCAA 22752
|||||| ||||| ||||| ||| ||| | | || || ||||||||||| |||||||
Sbjct 14438 GAGCCTTCATACGTCTCGTAAGGACCCAGCTCT-GCCGCCAGTTCGCAGCTGGCCTCCAG 14380
Query 22753 CGCGCCGTAATATATAGTCTCGAAGATTT---TCTTGTTCAATTCGGCGGCGGCGACGCT 22809
||| |||| || || ||||||||||| | | ||| || || || ||| |||
Sbjct 14379 GGCGGCGTAGTAGATTGTCTCGAAGATGTGAATGTTGAGCAGTTGAGCTTCGG---GGCT 14323
Query 22810 TTCGTACGGCATACGCATCATCACGAACGCGTCCGCCATACCCTGAACGCCTATACCGAT 22869
|||| |||| |||||||| | ||| ||||| |||| |||||| || || || |||||
Sbjct 14322 TTCGAACGGATAACGCATCAGGATGAAGGCGTCTGCCAAACCCTGGACTCCAATCCCGAT 14263
Query 22870 CGGTCGGTTTTTCAGATTCGACACTTTTGCCTCGGGCAAAGGATACCAATTCGAATCGAT 22929
|| |||| | || ||| | ||| ||||| | || || | || || ||
Sbjct 14262 GGGCCGGTGGCGCTTGTTGGACCTCTCTGCTTCGGGTACGGGGTAGTAGTTGATCTCAAT 14203
Query 22930 TGTTCTGTTCAAGTTTCTGGTCACAAT---TTTCGTTATNNNNNNNNNNNNNTCAAAGTC 22986
| ||||| || |||| |||| || || || | | ||||||
Sbjct 14202 GATCTTGTTC-AGGTTCT--TCACGATCACCTTGGTGACCGAGGCCAGCTTCTTAAAGTC 14146
Query 22987 GTAAACGCCCGAT--TGTACAACAAACTTGTTGACGGCGATCGAGGCAAGATTGCATACG 23044
||| | ||| | | || || |||||| |||||| ||||| || || || ||
Sbjct 14145 --AAAAGTCCGCTCAGGCGTGACGTACATGTTGAGGGCGATGGAGGCCAGGTTACAGACC 14088
Query 23045 GCCACCTCGTCTTTGGACGTGTACTCTAC-----AATTTCGGTACATAGATTGCTACACT 23099
||||||||||| ||| |||||||| || ||| ||||
Sbjct 14087 GCCACCTCGTCCTTGCTGGTGTACTCCACNNNNNNNNNNNNNNNNNNNNNNNGCTGCACT 14028
Query 23100 TTATCGTGCCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGT 23159
| || || |||| || ||||||||| || | |||||| | || |||||||||||||
Sbjct 14027 TGATGGTACCCAGGTTCTGCTGGTTGCTCTTCCTATTGCAGGCGTCTTTGTAGAGCATGT 13968
Query 23160 ACGGCGTGCCCGTCTCGACCTGCGACTCGATGATCGC 23196
| ||||| || || || ||| ||||||||||| ||
Sbjct 13967 AGGGCGTCCCGGTTTCCGTCTGAGACTCGATGATGGC 13931
Score = 134 bits (148), Expect = 1e-26
Identities = 218/314 (69%), Gaps = 0/314 (0%)
Strand=Plus/Minus
Query 23639 GATTTCGATATCATCGCGCATTGTTTCAGAGTGTCGTAGATGCCCTCGATGCTGTCCTCT 23698
||||| || || | ||||| || ||||| |||||||||||||||||||||||||| ||
Sbjct 13559 GATTTGGAAATGAGGGCGCACTGCTTCAGGGTGTCGTAGATGCCCTCGATGCTGTCATCC 13500
Query 23699 TTGGTCGCGACCAAGAAACACGAAGACATTTGCGCTTTGGGCGTAGCGGCCGAGAACAGT 23758
|| | |||| || ||| || |||| |||| | || |||| ||| ||
Sbjct 13499 TTCATGGCGAGCAGGAAGCAGCTGGACAGCTGCGGCCGGTTGGTCCCGGCGTTGAAGAGG 13440
Query 23759 GTCGGGCTGGCGTGCGTAAAGTATCCATTCGACATTAGATTGTACGTGTCGATGGCGGCA 23818
|| || |||||| || || | | ||||| || ||||| || || |||||||||
Sbjct 13439 GTTGGCGAGGCGTGGGTGAACCACTTCTCCGACAGCAGGTTGTAGGTCTCAATGGCGGCA 13380
Query 23819 TCAATGTCCTCTCCGTGTATACCGATGGCGACGCGCATCATCATGTATTGAGGTCTCTCG 23878
|||||||| |||||||| ||||||| | || | ||| | ||||| || || | ||||
Sbjct 13379 TCAATGTCTTCTCCGTGGATACCGACCGACACCCTCATGAGCATGTGCTGCGGGCGCTCG 13320
Query 23879 ACCGTGACGCCGTTAATTTTGAACAGATATGAACGTTGCATCGTTTTAAATCCAAAATAG 23938
|| ||||| || || | |||||| || || | || ||||| || ||||| ||
Sbjct 13319 GCCACTTTCCCGTTGATCTTCAGCAGATAGGAGCGCTCCAGGGTTTTGAAGCCAAAGAAG 13260
Query 23939 TCATAGTTAAAGTC 23952
| ||| ||| ||
Sbjct 13259 TTGTAGGAAAAATC 13246
>seq82826
Length=583
Score = 116 bits (128), Expect = 3e-21
Identities = 87/102 (85%), Gaps = 0/102 (0%)
Strand=Plus/Plus
Query 57981 GCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATTTTGGATG 58040
|||||||||||||| || || || ||||| || ||| |||||| || || || ||| ||
Sbjct 144 GCGTTCGCCGCCGTGGAGGGAATCTTCTTCTCTGGCTCCTTTGCCGCCATCTTCTGGCTG 203
Query 58041 AAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAG 58082
||||||||||||||||||||||||||||| || |||||||||
Sbjct 204 AAGAAACGCGGCCTGATGCCCGGCCTGACCTTCAGCAACGAG 245
>seq8880
Length=69162
Score = 93.3 bits (102), Expect = 4e-14
Identities = 98/129 (76%), Gaps = 0/129 (0%)
Strand=Plus/Plus
Query 23047 CACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGT 23106
|||||||||||| || || ||||| ||||| || || |||||||| | || || ||
Sbjct 10882 CACCTCGTCTTTACTTGTATATTCTACTATTTCTGTGCACAGATTGCTGGATTTGATGGT 10941
Query 23107 GCCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGT 23166
||||| ||| ||||||| | || | ||||| | ||||||||||||||||| || ||
Sbjct 10942 GCCCAGATTTTGCTGGTTGGTCTTCCTGTTGCAGGCGTCCTTGTAGAGCATGTAGGGAGT 11001
Query 23167 GCCCGTCTC 23175
|| |||||
Sbjct 11002 ACCTGTCTC 11010
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 445228605126720
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |