Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyprinodon_20nevadensis_20pectoralis_20[genbank_20GCA_5F000776015.1_ 202014-11-13] 96,516 sequences; 1,011,849,000 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq4461 199 4e-46 seq82826 116 3e-21 seq8880 93.3 4e-14 >seq4461 Length=101207 Score = 199 bits (220), Expect = 4e-46 Identities = 462/697 (66%), Gaps = 26/697 (4%) Strand=Plus/Minus Query 22514 TCGAAAGATTCATTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGCATCGGCGCCAAC 22573 |||| || || ||||| ||||| ||||| ||||| || || || ||||| || |||| | Sbjct 14615 TCGATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAGGCCGTGGGCATGGGGGCCAGC 14556 Query 22574 AGTAGCGAGTTTCTCAAGCCGTGCTTTGAAATTTTACTCTTGAGCATCGACCAGTCCCAC 22633 || || ||| |||| |||||| || | || || ||| |||| | |||||||||| Sbjct 14555 AGCAGGCTGTTCCTCACGCCGTGTTTGGCGATCTTCTCCTTCAGCAGCTTCCAGTCCCAC 14496 Query 22634 AGATCGGACGGCGTCACATTGTCCCACATATCGTATTGCAACACGCCGCGACTCGCCGGG 22693 | |||| ||| ||| || |||||||| ||||| || | | ||| || | || Sbjct 14495 ATGTCGGTCGGAGTC---TTCTCCCACATGTCGTACTGGAGGATGCCTTTGCTGACAGGT 14439 Query 22694 CTGCCTTCGTACGTTTCGTACGGA-CCATATATCGCGGCAAGTTCGCAGCTCGCCTCCAA 22752 |||||| ||||| ||||| ||| ||| | | || || ||||||||||| ||||||| Sbjct 14438 GAGCCTTCATACGTCTCGTAAGGACCCAGCTCT-GCCGCCAGTTCGCAGCTGGCCTCCAG 14380 Query 22753 CGCGCCGTAATATATAGTCTCGAAGATTT---TCTTGTTCAATTCGGCGGCGGCGACGCT 22809 ||| |||| || || ||||||||||| | | ||| || || || ||| ||| Sbjct 14379 GGCGGCGTAGTAGATTGTCTCGAAGATGTGAATGTTGAGCAGTTGAGCTTCGG---GGCT 14323 Query 22810 TTCGTACGGCATACGCATCATCACGAACGCGTCCGCCATACCCTGAACGCCTATACCGAT 22869 |||| |||| |||||||| | ||| ||||| |||| |||||| || || || ||||| Sbjct 14322 TTCGAACGGATAACGCATCAGGATGAAGGCGTCTGCCAAACCCTGGACTCCAATCCCGAT 14263 Query 22870 CGGTCGGTTTTTCAGATTCGACACTTTTGCCTCGGGCAAAGGATACCAATTCGAATCGAT 22929 || |||| | || ||| | ||| ||||| | || || | || || || Sbjct 14262 GGGCCGGTGGCGCTTGTTGGACCTCTCTGCTTCGGGTACGGGGTAGTAGTTGATCTCAAT 14203 Query 22930 TGTTCTGTTCAAGTTTCTGGTCACAAT---TTTCGTTATNNNNNNNNNNNNNTCAAAGTC 22986 | ||||| || |||| |||| || || || | | |||||| Sbjct 14202 GATCTTGTTC-AGGTTCT--TCACGATCACCTTGGTGACCGAGGCCAGCTTCTTAAAGTC 14146 Query 22987 GTAAACGCCCGAT--TGTACAACAAACTTGTTGACGGCGATCGAGGCAAGATTGCATACG 23044 ||| | ||| | | || || |||||| |||||| ||||| || || || || Sbjct 14145 --AAAAGTCCGCTCAGGCGTGACGTACATGTTGAGGGCGATGGAGGCCAGGTTACAGACC 14088 Query 23045 GCCACCTCGTCTTTGGACGTGTACTCTAC-----AATTTCGGTACATAGATTGCTACACT 23099 ||||||||||| ||| |||||||| || ||| |||| Sbjct 14087 GCCACCTCGTCCTTGCTGGTGTACTCCACNNNNNNNNNNNNNNNNNNNNNNNGCTGCACT 14028 Query 23100 TTATCGTGCCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGT 23159 | || || |||| || ||||||||| || | |||||| | || ||||||||||||| Sbjct 14027 TGATGGTACCCAGGTTCTGCTGGTTGCTCTTCCTATTGCAGGCGTCTTTGTAGAGCATGT 13968 Query 23160 ACGGCGTGCCCGTCTCGACCTGCGACTCGATGATCGC 23196 | ||||| || || || ||| ||||||||||| || Sbjct 13967 AGGGCGTCCCGGTTTCCGTCTGAGACTCGATGATGGC 13931 Score = 134 bits (148), Expect = 1e-26 Identities = 218/314 (69%), Gaps = 0/314 (0%) Strand=Plus/Minus Query 23639 GATTTCGATATCATCGCGCATTGTTTCAGAGTGTCGTAGATGCCCTCGATGCTGTCCTCT 23698 ||||| || || | ||||| || ||||| |||||||||||||||||||||||||| || Sbjct 13559 GATTTGGAAATGAGGGCGCACTGCTTCAGGGTGTCGTAGATGCCCTCGATGCTGTCATCC 13500 Query 23699 TTGGTCGCGACCAAGAAACACGAAGACATTTGCGCTTTGGGCGTAGCGGCCGAGAACAGT 23758 || | |||| || ||| || |||| |||| | || |||| ||| || Sbjct 13499 TTCATGGCGAGCAGGAAGCAGCTGGACAGCTGCGGCCGGTTGGTCCCGGCGTTGAAGAGG 13440 Query 23759 GTCGGGCTGGCGTGCGTAAAGTATCCATTCGACATTAGATTGTACGTGTCGATGGCGGCA 23818 || || |||||| || || | | ||||| || ||||| || || ||||||||| Sbjct 13439 GTTGGCGAGGCGTGGGTGAACCACTTCTCCGACAGCAGGTTGTAGGTCTCAATGGCGGCA 13380 Query 23819 TCAATGTCCTCTCCGTGTATACCGATGGCGACGCGCATCATCATGTATTGAGGTCTCTCG 23878 |||||||| |||||||| ||||||| | || | ||| | ||||| || || | |||| Sbjct 13379 TCAATGTCTTCTCCGTGGATACCGACCGACACCCTCATGAGCATGTGCTGCGGGCGCTCG 13320 Query 23879 ACCGTGACGCCGTTAATTTTGAACAGATATGAACGTTGCATCGTTTTAAATCCAAAATAG 23938 || ||||| || || | |||||| || || | || ||||| || ||||| || Sbjct 13319 GCCACTTTCCCGTTGATCTTCAGCAGATAGGAGCGCTCCAGGGTTTTGAAGCCAAAGAAG 13260 Query 23939 TCATAGTTAAAGTC 23952 | ||| ||| || Sbjct 13259 TTGTAGGAAAAATC 13246 >seq82826 Length=583 Score = 116 bits (128), Expect = 3e-21 Identities = 87/102 (85%), Gaps = 0/102 (0%) Strand=Plus/Plus Query 57981 GCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATTTTGGATG 58040 |||||||||||||| || || || ||||| || ||| |||||| || || || ||| || Sbjct 144 GCGTTCGCCGCCGTGGAGGGAATCTTCTTCTCTGGCTCCTTTGCCGCCATCTTCTGGCTG 203 Query 58041 AAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAG 58082 ||||||||||||||||||||||||||||| || ||||||||| Sbjct 204 AAGAAACGCGGCCTGATGCCCGGCCTGACCTTCAGCAACGAG 245 >seq8880 Length=69162 Score = 93.3 bits (102), Expect = 4e-14 Identities = 98/129 (76%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 23047 CACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGT 23106 |||||||||||| || || ||||| ||||| || || |||||||| | || || || Sbjct 10882 CACCTCGTCTTTACTTGTATATTCTACTATTTCTGTGCACAGATTGCTGGATTTGATGGT 10941 Query 23107 GCCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGT 23166 ||||| ||| ||||||| | || | ||||| | ||||||||||||||||| || || Sbjct 10942 GCCCAGATTTTGCTGGTTGGTCTTCCTGTTGCAGGCGTCCTTGTAGAGCATGTAGGGAGT 11001 Query 23167 GCCCGTCTC 23175 || ||||| Sbjct 11002 ACCTGTCTC 11010 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445228605126720