Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cyprinodon_20nevadensis_20pectoralis_20[genbank_20GCA_5F000776015.1_
202014-11-13] 96,516 sequences; 1,011,849,000 total letters
Query= NC_003310.1
Length=196858
Score E
Sequences producing significant alignments: (Bits) Value
seq4461 132 6e-26
seq4859 89.7 6e-13
>seq4461
Length=101207
Score = 132 bits (146), Expect = 6e-26
Identities = 304/458 (66%), Gaps = 0/458 (0%)
Strand=Plus/Minus
Query 63444 GCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCG 63503
||||||||||| ||||| | || ||| || | | || || || | || || || |||
Sbjct 13676 GCGGTGTTATTGTAAACCCGCAGCATCGGGACCAGCCCATTGGAGTTGCCGTTAGTGCCG 13617
Query 63504 GAGATATAGCCTCCACTGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATT 63563
| ||| |||| ||| | | | || || | | | || || || || || |
Sbjct 13616 GCGATGTAGCTCCCAGTCGATCTGATGCAGCTCACCGCCACGCCGATCCCGCCAGCGGAT 13557
Query 63564 TTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATGCCTTCTATGCTATCATCGATC 63623
|| || || | ||||| | || | ||||| |||||||| || ||||| ||||| ||
Sbjct 13556 TTGGAAATGAGGGCGCACTGCTTCAGGGTGTCGTAGATGCCCTCGATGCTGTCATCCTTC 13497
Query 63624 ATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGAGTAGTTCCCGCATTAAATAAGGTA 63683
||| || || || ||||| |||| || | || | || || || || || | |||
Sbjct 13496 ATGGCGAGCAGGAAGCAGCTGGACAGCTGCGGCCGGTTGGTCCCGGCGTTGAAGAGGGTT 13437
Query 63684 GGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCT 63743
|| || ||||| || ||||| || || || || || ||||| |||||||| || | ||
Sbjct 13436 GGCGAGGCGTGGGTGAACCACTTCTCCGACAGCAGGTTGTAGGTCTCAATGGCGGCATCA 13377
Query 63744 ATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACA 63803
|| || | || || || || | || | ||| | ||||||||| || | || |
Sbjct 13376 ATGTCTTCTCCGTGGATACCGACCGACACCCTCATGAGCATGTGCTGCGGGCGCTCGGCC 13317
Query 63804 ATTTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTG 63863
| ||| ||| || |||| || ||||| |||| ||||| || ||||| |||||
Sbjct 13316 ACTTTCCCGTTGATCTTCAGCAGATAGGAGCGCTCCAGGGTTTTGAAGCCAAAGAAGTTG 13257
Query 63864 TATGAAAAGTCTCGTTCGTAAATAATAACCGAATTGAG 63901
|| ||||| |||| || ||||| || ||||||||
Sbjct 13256 TAGGAAAAATCTCTGTCATAAATGATGGAGGAATTGAG 13219
>seq4859
Length=382710
Score = 89.7 bits (98), Expect = 6e-13
Identities = 100/134 (75%), Gaps = 0/134 (0%)
Strand=Plus/Minus
Query 33606 TCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 33665
|| || || || || | ||| || || || || || |||||||||||||| | ||| ||
Sbjct 368934 TCATCCCTGCTGATGAGTTCATTGGAGAAGGTAAGGCCGGGCATTAGGCCTCTCTTCTTT 368875
Query 33666 AGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGGCA 33725
||||| | |||| ||| ||||| || || |||||||| || ||||| || ||||| ||
Sbjct 368874 AGCCAGTAGATGGCAGCAAATGAGCCTGAGAAGAAGATCCCCTCTACAGCTGCAAAAGCC 368815
Query 33726 ATAAGTCTCTCTCC 33739
| |||| ||| ||
Sbjct 368814 ACCAGTCGCTCCCC 368801
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 629057756556480
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |