Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cyprinodon_20nevadensis_20pectoralis_20[genbank_20GCA_5F000776015.1_
202014-11-13] 96,516 sequences; 1,011,849,000 total letters
Query= NC_003389.1
Length=146454
Score E
Sequences producing significant alignments: (Bits) Value
seq4461 95.1 1e-14
seq4859 89.7 5e-13
>seq4461
Length=101207
Score = 95.1 bits (104), Expect = 1e-14
Identities = 289/447 (65%), Gaps = 0/447 (0%)
Strand=Plus/Minus
Query 37179 GCTAGTATATGGTTCAATGGACTCATTATTACTTAATATTTGAGATGTAGATGCAGTAGG 37238
||| || || | || |||||||| || || | | || || | || || || || ||
Sbjct 14628 GCTGGTGTAGGCCTCGATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAGGCCGTGGG 14569
Query 37239 CATTGGTGCTATTAGAAGGCTATTTCTCAATCCATGTGTATTAATTCTCTTTTTTAGTTC 37298
||| || || | || ||||| || |||| || ||| | || ||| || ||
Sbjct 14568 CATGGGGGCCAGCAGCAGGCTGTTCCTCACGCCGTGTTTGGCGATCTTCTCCTTCAGCAG 14509
Query 37299 ATTCCAATCCCATAAATCTGTTGGGTTCTTTAACCACATATCATATTGTAGAATACCTTT 37358
||||| ||||| | || || || |||| |||||| || || || || || |||||
Sbjct 14508 CTTCCAGTCCCACATGTCGGTCGGAGTCTTCTCCCACATGTCGTACTGGAGGATGCCTTT 14449
Query 37359 ACTCGCTGGAGAATCGTTATATGTCTCATAAGGTCCGTAAATTTTAGCTAGTTCGCAACT 37418
|| | || || | | ||| ||||| ||||| || | || |||||||| ||
Sbjct 14448 GCTGACAGGTGAGCCTTCATACGTCTCGTAAGGACCCAGCTCTGCCGCCAGTTCGCAGCT 14389
Query 37419 AGATTCTAGTGCGGCATAATATATTGTTTCGAAAATTTGTATATTTAATATTTTTGCTTC 37478
| || || ||||| || || ||||| ||||| || || || || | | || |||||
Sbjct 14388 GGCCTCCAGGGCGGCGTAGTAGATTGTCTCGAAGATGTGAATGTTGAGCAGTTGAGCTTC 14329
Query 37479 TTCGCTATCGAATGCATAGCCCAATAATATAAACACATCAGCCAAACCCTGAACACCGAT 37538
||| ||||| | ||| | || | || || | || ||||||||||| || || ||
Sbjct 14328 GGGGCTTTCGAACGGATAACGCATCAGGATGAAGGCGTCTGCCAAACCCTGGACTCCAAT 14269
Query 37539 ACCTATGGGTCTATGTTTCTTATTAGATCTAGACGATTCTATCACTGGATAATAATTGAT 37598
|| ||||| | || ||| || || || | ||| || || || || |||||
Sbjct 14268 CCCGATGGGCCGGTGGCGCTTGTTGGACCTCTCTGCTTCGGGTACGGGGTAGTAGTTGAT 14209
Query 37599 ATCTATTATTTTATTTAGATTTTTAAC 37625
|| || || || || || || || ||
Sbjct 14208 CTCAATGATCTTGTTCAGGTTCTTCAC 14182
>seq4859
Length=382710
Score = 89.7 bits (98), Expect = 5e-13
Identities = 94/124 (76%), Gaps = 0/124 (0%)
Strand=Plus/Minus
Query 11652 CTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGttttt 11711
|||| || || || || |||||||| || || || | |||||||| | |||| || |
Sbjct 368936 CTTCATCCCTGCTGATGAGTTCATTGGAGAAGGTAAGGCCGGGCATTAGGCCTCTCTTCT 368877
Query 11712 ttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATG 11771
||| ||| | || ||||||||||| || || ||||| || ||||| ||||||||||| |
Sbjct 368876 TTAGCCAGTAGATGGCAGCAAATGAGCCTGAGAAGAAGATCCCCTCTACAGCTGCAAAAG 368817
Query 11772 CTAC 11775
| ||
Sbjct 368816 CCAC 368813
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 467959548255040
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |