Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cyprinodon_20nevadensis_20pectoralis_20[genbank_20GCA_5F000776015.1_
202014-11-13] 96,516 sequences; 1,011,849,000 total letters
Query= NC_003391.1
Length=205719
Score E
Sequences producing significant alignments: (Bits) Value
seq4461 138 1e-27
seq4859 89.7 7e-13
seq8880 84.2 3e-11
>seq4461
Length=101207
Score = 138 bits (152), Expect = 1e-27
Identities = 298/446 (67%), Gaps = 0/446 (0%)
Strand=Plus/Minus
Query 66237 GCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCG 66296
||||||||||| ||||| | || ||| || | | |||||||| | || || || |||
Sbjct 13676 GCGGTGTTATTGTAAACCCGCAGCATCGGGACCAGCCCATTGGAGTTGCCGTTAGTGCCG 13617
Query 66297 GAGATATAGCTTCCACTTGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATT 66356
| ||| ||||| ||| | | | || || | | | || || || || || |
Sbjct 13616 GCGATGTAGCTCCCAGTCGATCTGATGCAGCTCACCGCCACGCCGATCCCGCCAGCGGAT 13557
Query 66357 TTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATC 66416
|| || || | ||||| | || | || || ||||||||||| || || |||||| ||
Sbjct 13556 TTGGAAATGAGGGCGCACTGCTTCAGGGTGTCGTAGATGCCCTCGATGCTGTCATCCTTC 13497
Query 66417 ATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTA 66476
||| || || || ||||| |||| || | || | || || || || || | |||
Sbjct 13496 ATGGCGAGCAGGAAGCAGCTGGACAGCTGCGGCCGGTTGGTCCCGGCGTTGAAGAGGGTT 13437
Query 66477 GGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCT 66536
|| || ||||| || ||||| || || || || || ||||| |||||||| || | ||
Sbjct 13436 GGCGAGGCGTGGGTGAACCACTTCTCCGACAGCAGGTTGTAGGTCTCAATGGCGGCATCA 13377
Query 66537 ATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACG 66596
|| || | || || || || | || | ||| | ||||||||| || | || |
Sbjct 13376 ATGTCTTCTCCGTGGATACCGACCGACACCCTCATGAGCATGTGCTGCGGGCGCTCGGCC 13317
Query 66597 ATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTG 66656
| || ||| || |||| || ||||| |||| ||||| || ||||| |||||
Sbjct 13316 ACTTTCCCGTTGATCTTCAGCAGATAGGAGCGCTCCAGGGTTTTGAAGCCAAAGAAGTTG 13257
Query 66657 TATGAAAAGTCTCGTTCGTAAATAAT 66682
|| ||||| |||| || ||||| ||
Sbjct 13256 TAGGAAAAATCTCTGTCATAAATGAT 13231
>seq4859
Length=382710
Score = 89.7 bits (98), Expect = 7e-13
Identities = 100/134 (75%), Gaps = 0/134 (0%)
Strand=Plus/Minus
Query 36182 TCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 36241
|| || || || || | ||| ||||| || || || |||||||||||||| | ||| ||
Sbjct 368934 TCATCCCTGCTGATGAGTTCATTGGAGAAGGTAAGGCCGGGCATTAGGCCTCTCTTCTTT 368875
Query 36242 AGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCA 36301
||||| | |||| |||||||| || || ||||| || || ||||| || ||||| ||
Sbjct 368874 AGCCAGTAGATGGCAGCAAATGAGCCTGAGAAGAAGATCCCCTCTACAGCTGCAAAAGCC 368815
Query 36302 ATAAGTCTCTCTCC 36315
| |||| ||| ||
Sbjct 368814 ACCAGTCGCTCCCC 368801
>seq8880
Length=69162
Score = 84.2 bits (92), Expect = 3e-11
Identities = 124/176 (70%), Gaps = 0/176 (0%)
Strand=Plus/Plus
Query 65448 GCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTATTT 65507
|| ||||||||||| ||||| | ||| |||| || ||||| |||||||| | | ||
Sbjct 9748 GCCAGTTCACAACTGGCCTCCAGGGCAGCGTAGTAGATGGTCTCGAAGATGTGAATGTTG 9807
Query 65508 AGATCTTGTGCTTCCAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTAAT 65567
|| || || ||| | || || ||||| || | ||| || || ||||| || |
Sbjct 9808 AGTAACTGGGCCTCCGGACTTTCGAATGGGTAGCGCATGAGGATGAAGGCGTCGGCCAGA 9867
Query 65568 CCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGG 65623
|| || |||||||| || || ||||| || | ||| || || ||||||| | |||
Sbjct 9868 CCCTGCACACCAATTCCTATTGGTCTGTGACGCTTGTTGGATTTTTCAGCCTGTGG 9923
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 657378747425440
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |