Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyprinodon_20nevadensis_20pectoralis_20[genbank_20GCA_5F000776015.1_ 202014-11-13] 96,516 sequences; 1,011,849,000 total letters Query= NC_003494.1 Length=111362 Score E Sequences producing significant alignments: (Bits) Value seq2879 98.7 7e-16 >seq2879 Length=316610 Score = 98.7 bits (108), Expect = 7e-16 Identities = 163/238 (68%), Gaps = 3/238 (1%) Strand=Plus/Minus Query 91798 TCATTTCCCTGTCTTTTCCTGCAAAGAGGACTACAACATCATCATGGACACTGTCAGACA 91857 |||||||| ||| ||| ||||||||||| || | | |||| ||||| | | | Sbjct 189148 TCATTTCCGCACCTTCACCTCCAAAGAGGACTGCAGCCTAATCACAGACACAGCTACCAA 189089 Query 91858 ACTGGAACAAAGTGGCTTCTACTGGGGTCCTTTGGGGGTCGAGGAGGCACATCGTATGCT 91917 || || | || |||||||||||||| || | || || |||||||| ||| | ||||| Sbjct 189088 GCTCGAGCGCAGCGGCTTCTACTGGGGCCCACTTGGAGTAGAGGAGGCCCATTGCATGCT 189029 Query 91918 GCGCAACTCGGCACTGGGCAGCT---TTCTCATTCGGGATAGCAGGCAAAAGGACGTCTT 91974 |||||| | | |||||||| | | || ||| | || ||||||||||| Sbjct 189028 CCGCAACGCCCCCCTGGGCAGTTNNNNNNNNNNNNGCGACAGCCGACAGAAGGACGTCTT 188969 Query 91975 GTTCACGCTGTCGTATCACTCTGTGACCGGACCCGTCAGTGTGAGGATTGAATACAAG 92032 || || ||||| || ||| || ||||| ||||| ||| | || || |||||| Sbjct 188968 CTTTACTCTGTCCTACCACGACAAGAAGGGACCGGTCAGCGTGCGCATCGACTACAAG 188911 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355814566423948