Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyprinodon_20nevadensis_20pectoralis_20[genbank_20GCA_5F000776015.1_ 202014-11-13] 96,516 sequences; 1,011,849,000 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq4461 138 2e-27 seq82826 102 1e-16 seq4859 102 1e-16 seq8880 98.7 1e-15 >seq4461 Length=101207 Score = 138 bits (152), Expect = 2e-27 Identities = 298/446 (67%), Gaps = 0/446 (0%) Strand=Plus/Minus Query 80116 GCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCG 80175 ||||||||||| ||||| | || ||| || | | |||||||| | || || || ||| Sbjct 13676 GCGGTGTTATTGTAAACCCGCAGCATCGGGACCAGCCCATTGGAGTTGCCGTTAGTGCCG 13617 Query 80176 GAGATATAGCTTCCACTGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATT 80235 | ||| ||||| ||| | | | || || | | | || || || || || | Sbjct 13616 GCGATGTAGCTCCCAGTCGATCTGATGCAGCTCACCGCCACGCCGATCCCGCCAGCGGAT 13557 Query 80236 TTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATGCTATCATCAATC 80295 || || || | ||||| | || | || || ||||||||||| ||||| ||||| || Sbjct 13556 TTGGAAATGAGGGCGCACTGCTTCAGGGTGTCGTAGATGCCCTCGATGCTGTCATCCTTC 13497 Query 80296 ATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTA 80355 ||| || || || ||||| |||| || | || | || || || || || | ||| Sbjct 13496 ATGGCGAGCAGGAAGCAGCTGGACAGCTGCGGCCGGTTGGTCCCGGCGTTGAAGAGGGTT 13437 Query 80356 GGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCT 80415 || || ||||| || ||||| || || ||||| || ||||| |||||||| || | || Sbjct 13436 GGCGAGGCGTGGGTGAACCACTTCTCCGACAGCAGGTTGTAGGTCTCAATGGCGGCATCA 13377 Query 80416 ATATCCCATTGATGAATTCCTACCGCGACACGCATTAACATGTGCTGAGGTCTTTCAACG 80475 || || | || || || |||| || | ||| | ||||||||| || | || | Sbjct 13376 ATGTCTTCTCCGTGGATACCGACCGACACCCTCATGAGCATGTGCTGCGGGCGCTCGGCC 13317 Query 80476 ATCTTGTTATTTATTTTCAACAAGTAAGATTTTTCCAAAGTTTTAAAACCAAAATAGTTG 80535 | || || || |||| || || || |||| ||||| || ||||| ||||| Sbjct 13316 ACTTTCCCGTTGATCTTCAGCAGATAGGAGCGCTCCAGGGTTTTGAAGCCAAAGAAGTTG 13257 Query 80536 TATGAAAAGTCTCGTTCGTAAATAAT 80561 || ||||| |||| || ||||| || Sbjct 13256 TAGGAAAAATCTCTGTCATAAATGAT 13231 >seq82826 Length=583 Score = 102 bits (112), Expect = 1e-16 Identities = 104/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 49982 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 50041 |||||||||| || || || |||||| || || || |||||||| ||||| || || | Sbjct 264 CCTCGTCTCTGCTGATGAGCTCGTTGCTGAAGGTCAGGCCGGGCATCAGGCCGCGTTTCT 205 Query 50042 TAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGG 50101 | ||||| || |||| ||||| || ||||| ||||||||||| || || ||||| || | Sbjct 204 TCAGCCAGAAGATGGCGGCAAAGGAGCCAGAGAAGAAGATTCCCTCCACGGCGGCGAACG 145 Query 50102 CAACAAGTCTCTCTCC 50117 | || | | |||||| Sbjct 144 CCACCACACGCTCTCC 129 >seq4859 Length=382710 Score = 102 bits (112), Expect = 1e-16 Identities = 103/134 (77%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 49984 TCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 50043 || || || || || ||||| ||||| || || || |||||||||||||| | ||| || Sbjct 368934 TCATCCCTGCTGATGAGTTCATTGGAGAAGGTAAGGCCGGGCATTAGGCCTCTCTTCTTT 368875 Query 50044 AGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGGCA 50103 ||||| | |||| |||||||| || || |||||||| || ||||| || ||||| || Sbjct 368874 AGCCAGTAGATGGCAGCAAATGAGCCTGAGAAGAAGATCCCCTCTACAGCTGCAAAAGCC 368815 Query 50104 ACAAGTCTCTCTCC 50117 || |||| ||| || Sbjct 368814 ACCAGTCGCTCCCC 368801 >seq8880 Length=69162 Score = 98.7 bits (108), Expect = 1e-15 Identities = 123/169 (73%), Gaps = 0/169 (0%) Strand=Plus/Plus Query 78785 TCCATCCGTAGAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 78844 ||||||||||||| ||||| || | |||||| || | || || || || || || | Sbjct 8352 TCCATCCGTAGAAGTGCATGCTGGAGAGTTTGCCGTAGTTGGGCTCAGCAATGTGAATGT 8411 Query 78845 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 78904 | | ||| ||||| ||||||||| | | || | ||||| ||||| || | || |||| Sbjct 8412 TGAGAGACTGACTCTGATCGATGTAAGTGCCACGATCTGCTGCCATCTTGAGGACAGTCT 8471 Query 78905 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGG 78953 | || | |||||||||| |||||||| | |||||| ||| ||||| Sbjct 8472 TCTGGGAGATTTCCCAAACTGTTTTATACAGCTGCTTAAGATCATCTGG 8520 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 717402244606240