Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyprinodon_20nevadensis_20pectoralis_20[genbank_20GCA_5F000776015.1_ 202014-11-13] 96,516 sequences; 1,011,849,000 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq4461 141 1e-28 seq4859 93.3 6e-14 seq8880 86.0 8e-12 >seq4461 Length=101207 Score = 141 bits (156), Expect = 1e-28 Identities = 306/458 (67%), Gaps = 0/458 (0%) Strand=Plus/Minus Query 72199 GCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCG 72258 ||||||||||| ||||| | || ||| || | | |||||||| || || || ||| Sbjct 13676 GCGGTGTTATTGTAAACCCGCAGCATCGGGACCAGCCCATTGGAGTTGCCGTTAGTGCCG 13617 Query 72259 GAGATATAGCTTCCACTGGCACGAATATTGCTAATTGATAGACCTATTCCCCCTGCCATT 72318 | ||| ||||| ||| | | | || ||| | | | || || || || || | Sbjct 13616 GCGATGTAGCTCCCAGTCGATCTGATGCAGCTCACCGCCACGCCGATCCCGCCAGCGGAT 13557 Query 72319 TTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATC 72378 || || || | ||||| | || | || || ||||||||||| || || |||||| || Sbjct 13556 TTGGAAATGAGGGCGCACTGCTTCAGGGTGTCGTAGATGCCCTCGATGCTGTCATCCTTC 13497 Query 72379 ATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTA 72438 ||| || || || ||||| |||| || | || | || || || || || | ||| Sbjct 13496 ATGGCGAGCAGGAAGCAGCTGGACAGCTGCGGCCGGTTGGTCCCGGCGTTGAAGAGGGTT 13437 Query 72439 GGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCT 72498 || || ||||| || ||||| || || ||||| || ||||| |||||||| || | || Sbjct 13436 GGCGAGGCGTGGGTGAACCACTTCTCCGACAGCAGGTTGTAGGTCTCAATGGCGGCATCA 13377 Query 72499 ATATCCCATTGATGTATTCCTACCGCGACACGCATTAACATATGCTGAGGTCTTTCAACG 72558 || || | || || || |||| || | ||| | ||| ||||| || | || | Sbjct 13376 ATGTCTTCTCCGTGGATACCGACCGACACCCTCATGAGCATGTGCTGCGGGCGCTCGGCC 13317 Query 72559 ATCTTGTTATTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTG 72618 | || || || |||| || ||||| |||| ||||| || ||||| ||||| Sbjct 13316 ACTTTCCCGTTGATCTTCAGCAGATAGGAGCGCTCCAGGGTTTTGAAGCCAAAGAAGTTG 13257 Query 72619 TATGAAAAGTCTCGTTCGTAAATAATAACCGAATTGAG 72656 || ||||| |||| || ||||| || |||||||| Sbjct 13256 TAGGAAAAATCTCTGTCATAAATGATGGAGGAATTGAG 13219 >seq4859 Length=382710 Score = 93.3 bits (102), Expect = 6e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 42089 TCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 42148 ||||| || || || | ||| ||||| || || || |||||||||||||| | ||| || Sbjct 368934 TCATCCCTGCTGATGAGTTCATTGGAGAAGGTAAGGCCGGGCATTAGGCCTCTCTTCTTT 368875 Query 42149 AGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGGCA 42208 ||||| | || | |||||||| || || |||||||| || ||||| || ||||| || Sbjct 368874 AGCCAGTAGATGGCAGCAAATGAGCCTGAGAAGAAGATCCCCTCTACAGCTGCAAAAGCC 368815 Query 42209 ATAAGTCTCTCTCC 42222 | |||| ||| || Sbjct 368814 ACCAGTCGCTCCCC 368801 >seq8880 Length=69162 Score = 86.0 bits (94), Expect = 8e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 71374 GATCCTGCATATGTATCGTATGGTCCTTCTTTTTCGGCTAGTTCACAACTCGCCTCTAAT 71433 || || || || || || || ||||| || | | || ||||||||||| ||||| | Sbjct 9712 GAGCCAGCGTACGTCTCATAGGGTCCGAATTCTGCTGCCAGTTCACAACTGGCCTCCAGG 9771 Query 71434 GCTCCATAATAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCCGGGCTATCA 71493 || | || || ||||| ||||| || | | ||||| || || ||||| || || Sbjct 9772 GCAGCGTAGTAGATGGTCTCGAAGATGTGAATGTTGAGTAACTGGGCCTCCGGACTTTCG 9831 Query 71494 AATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACGCCAATACCGATAGGT 71553 ||||| || | ||| || || ||||| || | || || || ||||| || || ||| Sbjct 9832 AATGGGTAGCGCATGAGGATGAAGGCGTCGGCCAGACCCTGCACACCAATTCCTATTGGT 9891 Query 71554 CTGTGTCTCTTATTAGAAATTTCAGCTTCTGG 71585 ||||| | ||| || || ||||||| | ||| Sbjct 9892 CTGTGACGCTTGTTGGATTTTTCAGCCTGTGG 9923 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 670329504112160