Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cyprinodon_20nevadensis_20pectoralis_20[genbank_20GCA_5F000776015.1_
202014-11-13] 96,516 sequences; 1,011,849,000 total letters
Query= NC_004105.1
Length=209771
Score E
Sequences producing significant alignments: (Bits) Value
seq4461 141 1e-28
seq4859 93.3 6e-14
seq8880 86.0 8e-12
>seq4461
Length=101207
Score = 141 bits (156), Expect = 1e-28
Identities = 306/458 (67%), Gaps = 0/458 (0%)
Strand=Plus/Minus
Query 72199 GCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCG 72258
||||||||||| ||||| | || ||| || | | |||||||| || || || |||
Sbjct 13676 GCGGTGTTATTGTAAACCCGCAGCATCGGGACCAGCCCATTGGAGTTGCCGTTAGTGCCG 13617
Query 72259 GAGATATAGCTTCCACTGGCACGAATATTGCTAATTGATAGACCTATTCCCCCTGCCATT 72318
| ||| ||||| ||| | | | || ||| | | | || || || || || |
Sbjct 13616 GCGATGTAGCTCCCAGTCGATCTGATGCAGCTCACCGCCACGCCGATCCCGCCAGCGGAT 13557
Query 72319 TTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATC 72378
|| || || | ||||| | || | || || ||||||||||| || || |||||| ||
Sbjct 13556 TTGGAAATGAGGGCGCACTGCTTCAGGGTGTCGTAGATGCCCTCGATGCTGTCATCCTTC 13497
Query 72379 ATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTA 72438
||| || || || ||||| |||| || | || | || || || || || | |||
Sbjct 13496 ATGGCGAGCAGGAAGCAGCTGGACAGCTGCGGCCGGTTGGTCCCGGCGTTGAAGAGGGTT 13437
Query 72439 GGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCT 72498
|| || ||||| || ||||| || || ||||| || ||||| |||||||| || | ||
Sbjct 13436 GGCGAGGCGTGGGTGAACCACTTCTCCGACAGCAGGTTGTAGGTCTCAATGGCGGCATCA 13377
Query 72499 ATATCCCATTGATGTATTCCTACCGCGACACGCATTAACATATGCTGAGGTCTTTCAACG 72558
|| || | || || || |||| || | ||| | ||| ||||| || | || |
Sbjct 13376 ATGTCTTCTCCGTGGATACCGACCGACACCCTCATGAGCATGTGCTGCGGGCGCTCGGCC 13317
Query 72559 ATCTTGTTATTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTG 72618
| || || || |||| || ||||| |||| ||||| || ||||| |||||
Sbjct 13316 ACTTTCCCGTTGATCTTCAGCAGATAGGAGCGCTCCAGGGTTTTGAAGCCAAAGAAGTTG 13257
Query 72619 TATGAAAAGTCTCGTTCGTAAATAATAACCGAATTGAG 72656
|| ||||| |||| || ||||| || ||||||||
Sbjct 13256 TAGGAAAAATCTCTGTCATAAATGATGGAGGAATTGAG 13219
>seq4859
Length=382710
Score = 93.3 bits (102), Expect = 6e-14
Identities = 101/134 (75%), Gaps = 0/134 (0%)
Strand=Plus/Minus
Query 42089 TCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 42148
||||| || || || | ||| ||||| || || || |||||||||||||| | ||| ||
Sbjct 368934 TCATCCCTGCTGATGAGTTCATTGGAGAAGGTAAGGCCGGGCATTAGGCCTCTCTTCTTT 368875
Query 42149 AGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGGCA 42208
||||| | || | |||||||| || || |||||||| || ||||| || ||||| ||
Sbjct 368874 AGCCAGTAGATGGCAGCAAATGAGCCTGAGAAGAAGATCCCCTCTACAGCTGCAAAAGCC 368815
Query 42209 ATAAGTCTCTCTCC 42222
| |||| ||| ||
Sbjct 368814 ACCAGTCGCTCCCC 368801
>seq8880
Length=69162
Score = 86.0 bits (94), Expect = 8e-12
Identities = 146/212 (69%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 71374 GATCCTGCATATGTATCGTATGGTCCTTCTTTTTCGGCTAGTTCACAACTCGCCTCTAAT 71433
|| || || || || || || ||||| || | | || ||||||||||| ||||| |
Sbjct 9712 GAGCCAGCGTACGTCTCATAGGGTCCGAATTCTGCTGCCAGTTCACAACTGGCCTCCAGG 9771
Query 71434 GCTCCATAATAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCCGGGCTATCA 71493
|| | || || ||||| ||||| || | | ||||| || || ||||| || ||
Sbjct 9772 GCAGCGTAGTAGATGGTCTCGAAGATGTGAATGTTGAGTAACTGGGCCTCCGGACTTTCG 9831
Query 71494 AATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACGCCAATACCGATAGGT 71553
||||| || | ||| || || ||||| || | || || || ||||| || || |||
Sbjct 9832 AATGGGTAGCGCATGAGGATGAAGGCGTCGGCCAGACCCTGCACACCAATTCCTATTGGT 9891
Query 71554 CTGTGTCTCTTATTAGAAATTTCAGCTTCTGG 71585
||||| | ||| || || ||||||| | |||
Sbjct 9892 CTGTGACGCTTGTTGGATTTTTCAGCCTGTGG 9923
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 670329504112160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |