Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyprinodon_20nevadensis_20pectoralis_20[genbank_20GCA_5F000776015.1_ 202014-11-13] 96,516 sequences; 1,011,849,000 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq1845 93.3 1e-13 >seq1845 Length=70248 Score = 93.3 bits (102), Expect = 1e-13 Identities = 116/157 (74%), Gaps = 4/157 (3%) Strand=Plus/Plus Query 78494 TGGTGGTATTATATCTCTAAAGGAATAGAATACCTAGATACTATCTTCTTCATCCTACGA 78553 ||||||||||| ||||| ||||| | || | ||| ||||| |||| || || ||| | Sbjct 58115 TGGTGGTATTACATCTCCAAAGGTGTGGAGTTCCTGGATACAGTCTTTTTTATACTAAGG 58174 Query 78554 AAGAAATTTAATCAAATTAGTTTTCTACATGTATATCATCATTTTACTATGTTTA--CTT 78611 ||||| || || ||| | || || || || || || ||||| | ||| ||||||| || Sbjct 58175 AAGAAGTTCAACCAAGTCAGCTTCCTCCACGTCTACCATCACTGTACCATGTTTATCCTC 58234 Query 78612 TGGGATGGATAGGTATTAAATGGTTCGCAGGAGGACA 78648 ||| ||||| ||||| || ||| || | || ||||| Sbjct 58235 TGG--TGGATCGGTATCAAGTGGGTCCCTGGTGGACA 58269 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1149974567785328