Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyprinodon_20nevadensis_20pectoralis_20[genbank_20GCA_5F000776015.1_ 202014-11-13] 96,516 sequences; 1,011,849,000 total letters Query= NC_006150.1 Length=221454 Score E Sequences producing significant alignments: (Bits) Value seq1328 149 9e-31 seq495 107 3e-18 >seq1328 Length=146004 Score = 149 bits (164), Expect = 9e-31 Identities = 160/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 8765 CCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGGAGCAGATGACGTTCGCCATGAGGCCT 8824 || |||||||||||||| |||||||| ||||||||||||| ||| |||| | |||| Sbjct 129450 CCTCCGAAGGTGCTGGGCTTCCAGTACTCCGGGGAGCAGATTGGATTCCCCATCAAGCCT 129391 Query 8825 TTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGCTCTCACCGAAGATGGCGTTGGGACGG 8884 |||||||| || ||||| |||| || | || |||| || ||||||||||| | ||| Sbjct 129390 TTGAGGGAGAAAGGAGCTCCCATTTCCACCATTGTCTCCCCAAAGATGGCGTTCTGTCGG 129331 Query 8885 GGCTTTTCCACCAAGAATCCGGTGTACAACTCCACAGCCTCGATGTCTCCGTAAAGGGCC 8944 ||||||||||||| | |||| ||| | |||||| || || | || || || || || Sbjct 129330 GGCTTTTCCACCAGCAGCCCGGGGTAAAGCTCCACGGCATCAACATCGCCATACAGCTCC 129271 Query 8945 CTGAGTTCGGCAGCGATTTCCTTTTCTCCTGT 8976 ||| ||| || ||||| || |||||||| Sbjct 129270 TCCAGTATGGCGGCCATTTCTTTGTCTCCTGT 129239 Score = 132 bits (146), Expect = 7e-26 Identities = 130/168 (77%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 9603 GATTGTTTCCCCGATAATGATGAGTCGAGTGGTCTGAAACAGTTGTTCGTCACTCCATTC 9662 |||| | || || |||| |||||| |||| ||||| || ||| ||||||| ||| || Sbjct 127896 GATTTTCTCACCAATAAGGATGAGCCGAGCCGTCTGGAAGAGTCTTTCGTCATCCCAGTC 127837 Query 9663 TGGATGTTCTCGTTTCAGAACATCGCACACTCTGTTGTGTTCCCTGAGCCAGATAGTAGC 9722 || || || |||| || || ||||||||||||||||| | ||||| || || || Sbjct 127836 AGGGTGAACTTCCTTCAAAATGTCACACACTCTGTTGTGTTCACGAAGCCAAATGGTGGC 127777 Query 9723 GTACATCATGAGACCAGGCACCAGGCCAAAAGCCTCTTGACCGACAGC 9770 ||||||||||||||| || |||||||| |||||||| || || ||||| Sbjct 127776 GTACATCATGAGACCGGGGACCAGGCCGAAAGCCTCGTGGCCAACAGC 127729 >seq495 Length=21320 Score = 107 bits (118), Expect = 3e-18 Identities = 124/167 (74%), Gaps = 0/167 (0%) Strand=Plus/Minus Query 9610 TCCCCGATAATGATGAGTCGAGTGGTCTGAAACAGTTGTTCGTCACTCCATTCTGGATGT 9669 || || ||||| || |||| |||||||| || || || || ||| ||| ||||||| Sbjct 8269 TCACCAATAATAATAAGTCTGGTGGTCTGGAAAAGCTGCTCATCATCCCAGGTTGGATGT 8210 Query 9670 TCTCGTTTCAGAACATCGCACACTCTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATC 9729 || | |||| | || |||||||||||||||||||||||||||||||| || |||| Sbjct 8209 TCACCCTTCAAGATGTCACACACTCTGTTGTGTTCCCTGAGCCAGATAGTGGCATACAAG 8150 Query 9730 ATGAGACCAGGCACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACG 9776 | || || || | || || || |||| ||||||| || ||||| Sbjct 8149 GTCAGGCCCGGTATGAGACCGAACACCTCCTGACCGATGGCGAGACG 8103 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 707670000255040