Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cyprinodon_20nevadensis_20pectoralis_20[genbank_20GCA_5F000776015.1_
202014-11-13] 96,516 sequences; 1,011,849,000 total letters
Query= NC_006150.1
Length=221454
Score E
Sequences producing significant alignments: (Bits) Value
seq1328 149 9e-31
seq495 107 3e-18
>seq1328
Length=146004
Score = 149 bits (164), Expect = 9e-31
Identities = 160/212 (75%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 8765 CCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGGAGCAGATGACGTTCGCCATGAGGCCT 8824
|| |||||||||||||| |||||||| ||||||||||||| ||| |||| | ||||
Sbjct 129450 CCTCCGAAGGTGCTGGGCTTCCAGTACTCCGGGGAGCAGATTGGATTCCCCATCAAGCCT 129391
Query 8825 TTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGCTCTCACCGAAGATGGCGTTGGGACGG 8884
|||||||| || ||||| |||| || | || |||| || ||||||||||| | |||
Sbjct 129390 TTGAGGGAGAAAGGAGCTCCCATTTCCACCATTGTCTCCCCAAAGATGGCGTTCTGTCGG 129331
Query 8885 GGCTTTTCCACCAAGAATCCGGTGTACAACTCCACAGCCTCGATGTCTCCGTAAAGGGCC 8944
||||||||||||| | |||| ||| | |||||| || || | || || || || ||
Sbjct 129330 GGCTTTTCCACCAGCAGCCCGGGGTAAAGCTCCACGGCATCAACATCGCCATACAGCTCC 129271
Query 8945 CTGAGTTCGGCAGCGATTTCCTTTTCTCCTGT 8976
||| ||| || ||||| || ||||||||
Sbjct 129270 TCCAGTATGGCGGCCATTTCTTTGTCTCCTGT 129239
Score = 132 bits (146), Expect = 7e-26
Identities = 130/168 (77%), Gaps = 0/168 (0%)
Strand=Plus/Minus
Query 9603 GATTGTTTCCCCGATAATGATGAGTCGAGTGGTCTGAAACAGTTGTTCGTCACTCCATTC 9662
|||| | || || |||| |||||| |||| ||||| || ||| ||||||| ||| ||
Sbjct 127896 GATTTTCTCACCAATAAGGATGAGCCGAGCCGTCTGGAAGAGTCTTTCGTCATCCCAGTC 127837
Query 9663 TGGATGTTCTCGTTTCAGAACATCGCACACTCTGTTGTGTTCCCTGAGCCAGATAGTAGC 9722
|| || || |||| || || ||||||||||||||||| | ||||| || || ||
Sbjct 127836 AGGGTGAACTTCCTTCAAAATGTCACACACTCTGTTGTGTTCACGAAGCCAAATGGTGGC 127777
Query 9723 GTACATCATGAGACCAGGCACCAGGCCAAAAGCCTCTTGACCGACAGC 9770
||||||||||||||| || |||||||| |||||||| || || |||||
Sbjct 127776 GTACATCATGAGACCGGGGACCAGGCCGAAAGCCTCGTGGCCAACAGC 127729
>seq495
Length=21320
Score = 107 bits (118), Expect = 3e-18
Identities = 124/167 (74%), Gaps = 0/167 (0%)
Strand=Plus/Minus
Query 9610 TCCCCGATAATGATGAGTCGAGTGGTCTGAAACAGTTGTTCGTCACTCCATTCTGGATGT 9669
|| || ||||| || |||| |||||||| || || || || ||| ||| |||||||
Sbjct 8269 TCACCAATAATAATAAGTCTGGTGGTCTGGAAAAGCTGCTCATCATCCCAGGTTGGATGT 8210
Query 9670 TCTCGTTTCAGAACATCGCACACTCTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATC 9729
|| | |||| | || |||||||||||||||||||||||||||||||| || ||||
Sbjct 8209 TCACCCTTCAAGATGTCACACACTCTGTTGTGTTCCCTGAGCCAGATAGTGGCATACAAG 8150
Query 9730 ATGAGACCAGGCACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACG 9776
| || || || | || || || |||| ||||||| || |||||
Sbjct 8149 GTCAGGCCCGGTATGAGACCGAACACCTCCTGACCGATGGCGAGACG 8103
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 707670000255040
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |