Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cyprinodon_20nevadensis_20pectoralis_20[genbank_20GCA_5F000776015.1_
202014-11-13] 96,516 sequences; 1,011,849,000 total letters
Query= NC_006639.1
Length=24748
Score E
Sequences producing significant alignments: (Bits) Value
seq87726 187 4e-43
seq91675 159 5e-35
seq3244 132 8e-27
seq1026 120 5e-23
seq53190 114 2e-21
seq21116 84.2 3e-12
>seq87726
Length=759
Score = 187 bits (206), Expect = 4e-43
Identities = 180/231 (78%), Gaps = 0/231 (0%)
Strand=Plus/Plus
Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491
||||||||||||||||| | ||| || ||||||||||| ||||||||||| || || ||
Sbjct 524 CGCTAAGCGTCATCGCAAAGTTCTCCGTGATAACATCCAGGGAATCACCAAACCCGCCAT 583
Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551
||| |||||||| || ||||||||||||||||| |||| || || |||| || ||||
Sbjct 584 CCGCCGTCTGGCCCGCCGTGGTGGAGTCAAGCGGATCTCAGGTCTGATCTACGAGGAGAC 643
Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611
|| | ||| | ||| | ||||| ||| ||| |||| ||| || || ||| |||||
Sbjct 644 CCGCGGTGTGCTCAAGGTTTTCCTGGAGAACGTCATCCGTGACGCCGTCACCTACACCGA 703
Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAA 16662
||||||||| | ||||| |||||| |||||||| | || || || ||||
Sbjct 704 GCACGCTAAGAGGAAGACCGTCACCGCCATGGATGTGGTGTACGCTCTGAA 754
>seq91675
Length=1021
Score = 159 bits (176), Expect = 5e-35
Identities = 196/268 (73%), Gaps = 0/268 (0%)
Strand=Plus/Minus
Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491
|||||||||||| |||| | || || ||||||||||| || ||||| || || || ||
Sbjct 305 CGCTAAGCGTCACCGCAAAGTCCTCCGTGATAACATCCAGGGCATCACTAAACCCGCCAT 246
Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551
||| ||| ||||||| || |||||||||||||| ||||||| | |||| || ||||
Sbjct 245 CCGCCGTTTGGCTCGCCGCGGTGGAGTCAAGCGCATCTCTGGTCTCATCTACGAGGAGAC 186
Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611
|| | ||| ||||| ||||| | ||| ||| |||| ||| || || ||| || ||
Sbjct 185 CCGCGGTGTCCTGAAGGTCTTCTTGGAGAACGTCATCCGTGACGCAGTCACCTACACTGA 126
Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671
|||||| || | |||||||| || | |||||| | || ||||| | || | || ||
Sbjct 125 GCACGCGAAGAGGAAGACTGTGACGGCAATGGATGTGGTGTATGCTCTAAAGAGGCAGGG 66
Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAA 16699
||| | | || || || ||| |||||
Sbjct 65 CCGCACTCTCTACGGCTTCGGAGGTTAA 38
>seq3244
Length=101378
Score = 132 bits (146), Expect = 8e-27
Identities = 185/266 (70%), Gaps = 23/266 (9%)
Strand=Plus/Plus
Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491
|||||||||||| || | | || || ||||||||||| || || ||||| ||||||||
Sbjct 94996 CGCTAAGCGTCACCGTAAAGTCCTCCGTGATAACATCCAGGGCATTACCAAACCAGCTAT 95055
Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551
||| ||| ||||||| |||||||| ||||||||| ||||||| | |||| || ||||
Sbjct 95056 CCGCCGTTTGGCTCGCCGTGGTGGCGTCAAGCGTATCTCTGGTCTCATCTACGAGGAGAC 95115
Query 16552 TCGTGATGTTT-----------------------TGAAGATCTTCCTCAAGACCGTTATC 16588
|||| ||| ||||| | ||| | ||| ||| |||
Sbjct 95116 CCGTGGTGTNNNNNNNNNNNNNNNNNNNNNNNCCTGAAGGTTTTCTTGGAGAACGTCATC 95175
Query 16589 CATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCCATGGATATC 16648
| |||||| || || ||||||||||| || | ||||| || ||| |||||||| |
Sbjct 95176 CGTGATGCCGTCACTTACACCGAGCACGCCAAGAGGAAGACCGTGACCGCCATGGATGTG 95235
Query 16649 GTCTATGCATTGAAACGTCAAGGCCG 16674
|| ||||| |||| | || |||||
Sbjct 95236 GTGTATGCTCTGAAGAGGCAGGGCCG 95261
>seq1026
Length=241586
Score = 120 bits (132), Expect = 5e-23
Identities = 187/263 (71%), Gaps = 7/263 (3%)
Strand=Plus/Minus
Query 16438 GCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCG 16497
|||||| || | | || || ||||||||| | | || |||||||| ||||||| |
Sbjct 194235 GCGTCACCGTAAAGTCCTACGTGATAACATCTAGAGGATTACCAAGCCTGCTATCCACCA 194176
Query 16498 TCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGA-AGAGATTCGTG 16556
||||||||| ||| |||||||||||| ||||||| | |||| || | | ||||
Sbjct 194175 CCTGGCTCGT--TGG-GGAGTCAAGCGTATCTCTGGTCTCCTCTACGAGAAACTTTCG-- 194121
Query 16557 ATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACG 16616
| || | || | || || ||| |||||||| | |||| || |||||| |||||||
Sbjct 194120 -TTTTCTCAAAGTGTTTCTGGAGAACGTTATCCGTAATGCCGTCGCCTATACTGAGCACG 194062
Query 16617 CTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTA 16676
||| | ||||| || ||| |||||||| | || ||||| | || | || || || |
Sbjct 194061 CTACTAGGAAGACCGTGACCGCCATGGATGTGGTTTATGCTCTCAAGAGGCAGGGTCGCA 194002
Query 16677 AGATTTATGGTTTTGGAAGTTAA 16699
| ||||| |||| |||||||
Sbjct 194001 CTCTGTATGGCTTTGAAAGTTAA 193979
>seq53190
Length=240
Score = 114 bits (126), Expect = 2e-21
Identities = 140/191 (73%), Gaps = 0/191 (0%)
Strand=Plus/Minus
Query 16512 GTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCT 16571
||||||||||||| |||| || | |||| || |||| || | ||| |||||| |||
Sbjct 240 GTGGAGTCAAGCGCATCTCCGGTCTCATCTACGAGGAGACCCGCGGTGTGTTGAAGGTCT 181
Query 16572 TCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTG 16631
|||| ||| ||| |||| || || || ||| |||||||||||||| | |||||||
Sbjct 180 TCCTGGAGAACGTCATCCGGGACGCCGTCACCTACACCGAGCACGCTAAGAGGAAGACTG 121
Query 16632 TCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTG 16691
| ||| |||||||| | || || || |||| | || ||||| | | || || ||||
Sbjct 120 TGACCGCCATGGATGTGGTGTACGCTCTGAAGAGGCAGGGCCGCACCCTGTACGGCTTTG 61
Query 16692 GAAGTTAATCT 16702
|| ||||| ||
Sbjct 60 GAGGTTAAACT 50
>seq21116
Length=45396
Score = 84.2 bits (92), Expect = 3e-12
Identities = 69/84 (82%), Gaps = 0/84 (0%)
Strand=Plus/Plus
Query 16436 AAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGT 16495
|| ||||| || | | || || ||||| ||||| || ||||||||||||||||||||
Sbjct 9258 AAACGTCACCGTAAAGTCCTCCGTGATAATATCCAGGGGATCACCAAGCCAGCTATCCGC 9317
Query 16496 CGTCTGGCTCGTCGTGGTGGAGTC 16519
||||||||||| ||||| ||||||
Sbjct 9318 CGTCTGGCTCGCCGTGGGGGAGTC 9341
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 78986954745588
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |