Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyprinodon_20nevadensis_20pectoralis_20[genbank_20GCA_5F000776015.1_ 202014-11-13] 96,516 sequences; 1,011,849,000 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq87726 187 4e-43 seq91675 159 5e-35 seq3244 132 8e-27 seq1026 120 5e-23 seq53190 114 2e-21 seq21116 84.2 3e-12 >seq87726 Length=759 Score = 187 bits (206), Expect = 4e-43 Identities = 180/231 (78%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||||||||||||||||| | ||| || ||||||||||| ||||||||||| || || || Sbjct 524 CGCTAAGCGTCATCGCAAAGTTCTCCGTGATAACATCCAGGGAATCACCAAACCCGCCAT 583 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| |||||||| || ||||||||||||||||| |||| || || |||| || |||| Sbjct 584 CCGCCGTCTGGCCCGCCGTGGTGGAGTCAAGCGGATCTCAGGTCTGATCTACGAGGAGAC 643 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | ||| | ||| | ||||| ||| ||| |||| ||| || || ||| ||||| Sbjct 644 CCGCGGTGTGCTCAAGGTTTTCCTGGAGAACGTCATCCGTGACGCCGTCACCTACACCGA 703 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAA 16662 ||||||||| | ||||| |||||| |||||||| | || || || |||| Sbjct 704 GCACGCTAAGAGGAAGACCGTCACCGCCATGGATGTGGTGTACGCTCTGAA 754 >seq91675 Length=1021 Score = 159 bits (176), Expect = 5e-35 Identities = 196/268 (73%), Gaps = 0/268 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 |||||||||||| |||| | || || ||||||||||| || ||||| || || || || Sbjct 305 CGCTAAGCGTCACCGCAAAGTCCTCCGTGATAACATCCAGGGCATCACTAAACCCGCCAT 246 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| ||| ||||||| || |||||||||||||| ||||||| | |||| || |||| Sbjct 245 CCGCCGTTTGGCTCGCCGCGGTGGAGTCAAGCGCATCTCTGGTCTCATCTACGAGGAGAC 186 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | ||| ||||| ||||| | ||| ||| |||| ||| || || ||| || || Sbjct 185 CCGCGGTGTCCTGAAGGTCTTCTTGGAGAACGTCATCCGTGACGCAGTCACCTACACTGA 126 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || | |||||||| || | |||||| | || ||||| | || | || || Sbjct 125 GCACGCGAAGAGGAAGACTGTGACGGCAATGGATGTGGTGTATGCTCTAAAGAGGCAGGG 66 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAA 16699 ||| | | || || || ||| ||||| Sbjct 65 CCGCACTCTCTACGGCTTCGGAGGTTAA 38 >seq3244 Length=101378 Score = 132 bits (146), Expect = 8e-27 Identities = 185/266 (70%), Gaps = 23/266 (9%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 |||||||||||| || | | || || ||||||||||| || || ||||| |||||||| Sbjct 94996 CGCTAAGCGTCACCGTAAAGTCCTCCGTGATAACATCCAGGGCATTACCAAACCAGCTAT 95055 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| ||| ||||||| |||||||| ||||||||| ||||||| | |||| || |||| Sbjct 95056 CCGCCGTTTGGCTCGCCGTGGTGGCGTCAAGCGTATCTCTGGTCTCATCTACGAGGAGAC 95115 Query 16552 TCGTGATGTTT-----------------------TGAAGATCTTCCTCAAGACCGTTATC 16588 |||| ||| ||||| | ||| | ||| ||| ||| Sbjct 95116 CCGTGGTGTNNNNNNNNNNNNNNNNNNNNNNNCCTGAAGGTTTTCTTGGAGAACGTCATC 95175 Query 16589 CATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCCATGGATATC 16648 | |||||| || || ||||||||||| || | ||||| || ||| |||||||| | Sbjct 95176 CGTGATGCCGTCACTTACACCGAGCACGCCAAGAGGAAGACCGTGACCGCCATGGATGTG 95235 Query 16649 GTCTATGCATTGAAACGTCAAGGCCG 16674 || ||||| |||| | || ||||| Sbjct 95236 GTGTATGCTCTGAAGAGGCAGGGCCG 95261 >seq1026 Length=241586 Score = 120 bits (132), Expect = 5e-23 Identities = 187/263 (71%), Gaps = 7/263 (3%) Strand=Plus/Minus Query 16438 GCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCG 16497 |||||| || | | || || ||||||||| | | || |||||||| ||||||| | Sbjct 194235 GCGTCACCGTAAAGTCCTACGTGATAACATCTAGAGGATTACCAAGCCTGCTATCCACCA 194176 Query 16498 TCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGA-AGAGATTCGTG 16556 ||||||||| ||| |||||||||||| ||||||| | |||| || | | |||| Sbjct 194175 CCTGGCTCGT--TGG-GGAGTCAAGCGTATCTCTGGTCTCCTCTACGAGAAACTTTCG-- 194121 Query 16557 ATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACG 16616 | || | || | || || ||| |||||||| | |||| || |||||| ||||||| Sbjct 194120 -TTTTCTCAAAGTGTTTCTGGAGAACGTTATCCGTAATGCCGTCGCCTATACTGAGCACG 194062 Query 16617 CTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTA 16676 ||| | ||||| || ||| |||||||| | || ||||| | || | || || || | Sbjct 194061 CTACTAGGAAGACCGTGACCGCCATGGATGTGGTTTATGCTCTCAAGAGGCAGGGTCGCA 194002 Query 16677 AGATTTATGGTTTTGGAAGTTAA 16699 | ||||| |||| ||||||| Sbjct 194001 CTCTGTATGGCTTTGAAAGTTAA 193979 >seq53190 Length=240 Score = 114 bits (126), Expect = 2e-21 Identities = 140/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 16512 GTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCT 16571 ||||||||||||| |||| || | |||| || |||| || | ||| |||||| ||| Sbjct 240 GTGGAGTCAAGCGCATCTCCGGTCTCATCTACGAGGAGACCCGCGGTGTGTTGAAGGTCT 181 Query 16572 TCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTG 16631 |||| ||| ||| |||| || || || ||| |||||||||||||| | ||||||| Sbjct 180 TCCTGGAGAACGTCATCCGGGACGCCGTCACCTACACCGAGCACGCTAAGAGGAAGACTG 121 Query 16632 TCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTG 16691 | ||| |||||||| | || || || |||| | || ||||| | | || || |||| Sbjct 120 TGACCGCCATGGATGTGGTGTACGCTCTGAAGAGGCAGGGCCGCACCCTGTACGGCTTTG 61 Query 16692 GAAGTTAATCT 16702 || ||||| || Sbjct 60 GAGGTTAAACT 50 >seq21116 Length=45396 Score = 84.2 bits (92), Expect = 3e-12 Identities = 69/84 (82%), Gaps = 0/84 (0%) Strand=Plus/Plus Query 16436 AAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGT 16495 || ||||| || | | || || ||||| ||||| || |||||||||||||||||||| Sbjct 9258 AAACGTCACCGTAAAGTCCTCCGTGATAATATCCAGGGGATCACCAAGCCAGCTATCCGC 9317 Query 16496 CGTCTGGCTCGTCGTGGTGGAGTC 16519 ||||||||||| ||||| |||||| Sbjct 9318 CGTCTGGCTCGCCGTGGGGGAGTC 9341 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 78986954745588