Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyprinodon_20nevadensis_20pectoralis_20[genbank_20GCA_5F000776015.1_ 202014-11-13] 96,516 sequences; 1,011,849,000 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq4461 150 2e-31 seq8880 109 5e-19 >seq4461 Length=101207 Score = 150 bits (166), Expect = 2e-31 Identities = 526/818 (64%), Gaps = 28/818 (3%) Strand=Plus/Minus Query 145124 GACTCGTTATTGCCCAGGATTTGAGCGGTCGTTGCGGTGGGCATGTACGCCACCAATAAT 145183 |||||||| ||||||||||| || ||||| | || ||||||||| |||| || | Sbjct 14609 GACTCGTTGTTGCCCAGGATCTGGGCGGTGGAGGCCGTGGGCATGGGGGCCAGCAGCAGG 14550 Query 145184 GAATTGCGCAGGCCGTGCTTCTTGATGTCTTCCTTTAGCGTACCCCAATCCCATAGCGAA 145243 || | || |||||| || ||| | ||||| ||| ||| ||||| | Sbjct 14549 CTGTTCCTCACGCCGTGTTTGGCGATCTTCTCCTTCAGCAGCTTCCAGTCCCACATGTCG 14490 Query 145244 GTCGGCCTCACGTCCCACATGTCGTACTGCAAAATGCCCTCGCTGGCGGGGCTGCCTTGA 145303 ||||| || ||||||||||||||||| | ||||| | |||| | || ||||| | Sbjct 14489 GTCGGAGTCTTCTCCCACATGTCGTACTGGAGGATGCCTTTGCTGACAGGTGAGCCTTCA 14430 Query 145304 AAGGAACTGTAACTGCCCCAAGTTTTGGCG--AGCTCGCAACTCGCCTCCAGAGCGCCGA 145361 | | |||| ||| || | || || || ||||| || |||||||| ||| || Sbjct 14429 TACGTCTCGTAAGGACCC--AGCTCTGCCGCCAGTTCGCAGCTGGCCTCCAGGGCGGCGT 14372 Query 145362 AATAAATTGTCTCGGCAATTTGCCTGTTGAGCAGCATCGCTTCATCGCTCTCGTACGGCA 145421 | || ||||||||| || || |||||||||| ||||| ||| ||| |||| Sbjct 14371 AGTAGATTGTCTCGAAGATGTGAATGTTGAGCAGTTGAGCTTCGGGGCTTTCGAACGGAT 14312 Query 145422 TGCGCAGCAGTACAAAAGCATCGGCGAGCCCCTGTATTCCCACGCCGATGGGCCGATGTT 145481 |||| ||| | || || || || | ||||| | ||| | ||||||||||| || Sbjct 14311 AACGCATCAGGATGAAGGCGTCTGCCAAACCCTGGACTCCAATCCCGATGGGCCGGTGGC 14252 Query 145482 TCATGTTG-----CTCATCCTCGCCGACTCGATAGGATATCGATTACGGTCGATAATTTT 145536 | ||||| ||| | ||| || | ||| | | ||| || || || || Sbjct 14251 GCTTGTTGGACCTCTCTGCTTCGGGTACGGGGTAGTA-GTTGAT----CTCAATGATCTT 14197 Query 145537 ATTCAAGTTTCGCACTACTACCTTTGT-AATGTGCCGCAACTTTTCAAAGTCAAACCGAG 145595 |||| ||| ||| | ||||| || | | | | || ||| | ||||||||| || Sbjct 14196 GTTCAGGTTCTTCACGATCACCTTGGTGACCGAGGC-CAGCTTCTTAAAGTCAAA---AG 14141 Query 145596 CCTCGTCAACGACCACACAGCTATTGACGGCGATCGACGCCAAATTACAAACTGCCGTCT 145655 | ||| || | | |||| |||||| || |||| ||||| || ||| || Sbjct 14140 TCCGCTCAGGCGTGACGTACATGTTGAGGGCGATGGAGGCCAGGTTACAGACCGCCACCT 14081 Query 145656 CCTCGGCGTCGCTGTATTGTAC-----GATCTCGGCGCACAAATTGCTACATTTGATGGT 145710 | || | | |||| | || ||| || |||||||| Sbjct 14080 CGTCCTTGCTGGTGTACTCCACNNNNNNNNNNNNNNNNNNNNNNNGCTGCACTTGATGGT 14021 Query 145711 TCCCAGATTTTGCTGATTACTTTTCCTGTTGCACGCGTCCTTGTAGAGCATGTACGGTCC 145770 ||||| || ||||| || || ||||| ||||| ||||| |||||||||||||| || Sbjct 14020 ACCCAGGTTCTGCTGGTTGCTCTTCCTATTGCAGGCGTCTTTGTAGAGCATGTAGGGCGT 13961 Query 145771 GCCAGTCTCCACCTGCGTCTCCACGATAAAACGGTGCAA--GTCCTGCGCACGCACCTGC 145828 || || ||| ||| | ||| | ||| || ||| | ||| || |||| | Sbjct 13960 CCCGGTTTCCGTCTGAGACTCGATGAT--GGCGTACCAAACCTGCTGAGCCTTCACCACC 13903 Query 145829 TGCTGGTAGCGGCCCTCTTCTTCGTATTTCCTGTAGAGCTCCTCAAACGCGGAACCGTAG 145888 | || | || || | ||| ||||| ||||||||| ||||||| | || || Sbjct 13902 TTCTTCACCCTCCCTTCCTTTTCATATTTAGTGTAGAGCTTCTCAAACTCCTCCCCCCAG 13843 Query 145889 CAATCGGACAGGCCGGGACACTTGTTGGGACACATCAG 145926 || ||| ||| |||||||||| ||||||||||||||| Sbjct 13842 CACTCGTCCAGCCCGGGACACTCGTTGGGACACATCAG 13805 Score = 98.7 bits (108), Expect = 9e-16 Identities = 223/329 (68%), Gaps = 10/329 (3%) Strand=Plus/Minus Query 146221 CACGCCGAGACCGCCGCCGTACTTGGATATAGCGGCGCAGTCGCCGAGCGTCTCGTAGAT 146280 |||||||| ||||| || | ||||| || |||||| | || || |||||||| Sbjct 13578 CACGCCGATCCCGCCAGCGGATTTGGAAATGAGGGCGCACTGCTTCAGGGTGTCGTAGAT 13519 Query 146281 GCCGTCAATGCTATCG--CTTCGAATGCCGAGCAGAAAGCACGAGCACATCTGCGCCATC 146338 ||| || ||||| || |||| ||| ||||||| ||||| | ||| ||||| | | Sbjct 13518 GCCCTCGATGCTGTCATCCTTC--ATGGCGAGCAGGAAGCAGCTGGACAGCTGCGGC--C 13463 Query 146339 GGC--GTCCCCGCCGAGAACAACGTCGGGCTCGCGTGCGTAAAC-ATTTTTCGGCTCATC 146395 || ||||| || ||| | || || ||||| || ||| | || || | || | Sbjct 13462 GGTTGGTCCCGGCGTTGAAGAGGGTTGGCGAGGCGTGGGTGAACCACTTCTCCGA-CAGC 13404 Query 146396 ATCCGATACGTTTCGATAGCGTCTTGAATGTCGTCGCCATGAATGCCCAAAGCGACGCGC 146455 | || || || || ||| | | |||||| || || || || || | | || | | Sbjct 13403 AGGTTGTAGGTCTCAATGGCGGCATCAATGTCTTCTCCGTGGATACCGACCGACACCCTC 13344 Query 146456 ATGAGCATGTGTTGGGGCCGCTCCGCCACTTGATTGTCAATCTTTAACAAATAGCCGTTC 146515 ||||||||||| || || ||||| ||||||| || ||||| | || |||| | | Sbjct 13343 ATGAGCATGTGCTGCGGGCGCTCGGCCACTTTCCCGTTGATCTTCAGCAGATAGGAGCGC 13284 Query 146516 TCCAGGGTTTTGTATCCGAAAAATTTGTA 146544 |||||||||||| | || || || ||||| Sbjct 13283 TCCAGGGTTTTGAAGCCAAAGAAGTTGTA 13255 >seq8880 Length=69162 Score = 109 bits (120), Expect = 5e-19 Identities = 83/98 (85%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 145670 TATTGTACGATCTCGGCGCACAAATTGCTACATTTGATGGTTCCCAGATTTTGCTGATTA 145729 |||| ||| || || | ||||| |||||| |||||||||| |||||||||||||| || Sbjct 10901 TATTCTACTATTTCTGTGCACAGATTGCTGGATTTGATGGTGCCCAGATTTTGCTGGTTG 10960 Query 145730 CTTTTCCTGTTGCACGCGTCCTTGTAGAGCATGTACGG 145767 | ||||||||||| |||||||||||||||||||| || Sbjct 10961 GTCTTCCTGTTGCAGGCGTCCTTGTAGAGCATGTAGGG 10998 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 471443340157440