Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cyprinodon_20nevadensis_20pectoralis_20[genbank_20GCA_5F000776015.1_
202014-11-13] 96,516 sequences; 1,011,849,000 total letters
Query= NC_007921.1
Length=147544
Score E
Sequences producing significant alignments: (Bits) Value
seq4461 150 2e-31
seq8880 109 5e-19
>seq4461
Length=101207
Score = 150 bits (166), Expect = 2e-31
Identities = 526/818 (64%), Gaps = 28/818 (3%)
Strand=Plus/Minus
Query 145124 GACTCGTTATTGCCCAGGATTTGAGCGGTCGTTGCGGTGGGCATGTACGCCACCAATAAT 145183
|||||||| ||||||||||| || ||||| | || ||||||||| |||| || |
Sbjct 14609 GACTCGTTGTTGCCCAGGATCTGGGCGGTGGAGGCCGTGGGCATGGGGGCCAGCAGCAGG 14550
Query 145184 GAATTGCGCAGGCCGTGCTTCTTGATGTCTTCCTTTAGCGTACCCCAATCCCATAGCGAA 145243
|| | || |||||| || ||| | ||||| ||| ||| ||||| |
Sbjct 14549 CTGTTCCTCACGCCGTGTTTGGCGATCTTCTCCTTCAGCAGCTTCCAGTCCCACATGTCG 14490
Query 145244 GTCGGCCTCACGTCCCACATGTCGTACTGCAAAATGCCCTCGCTGGCGGGGCTGCCTTGA 145303
||||| || ||||||||||||||||| | ||||| | |||| | || ||||| |
Sbjct 14489 GTCGGAGTCTTCTCCCACATGTCGTACTGGAGGATGCCTTTGCTGACAGGTGAGCCTTCA 14430
Query 145304 AAGGAACTGTAACTGCCCCAAGTTTTGGCG--AGCTCGCAACTCGCCTCCAGAGCGCCGA 145361
| | |||| ||| || | || || || ||||| || |||||||| ||| ||
Sbjct 14429 TACGTCTCGTAAGGACCC--AGCTCTGCCGCCAGTTCGCAGCTGGCCTCCAGGGCGGCGT 14372
Query 145362 AATAAATTGTCTCGGCAATTTGCCTGTTGAGCAGCATCGCTTCATCGCTCTCGTACGGCA 145421
| || ||||||||| || || |||||||||| ||||| ||| ||| ||||
Sbjct 14371 AGTAGATTGTCTCGAAGATGTGAATGTTGAGCAGTTGAGCTTCGGGGCTTTCGAACGGAT 14312
Query 145422 TGCGCAGCAGTACAAAAGCATCGGCGAGCCCCTGTATTCCCACGCCGATGGGCCGATGTT 145481
|||| ||| | || || || || | ||||| | ||| | ||||||||||| ||
Sbjct 14311 AACGCATCAGGATGAAGGCGTCTGCCAAACCCTGGACTCCAATCCCGATGGGCCGGTGGC 14252
Query 145482 TCATGTTG-----CTCATCCTCGCCGACTCGATAGGATATCGATTACGGTCGATAATTTT 145536
| ||||| ||| | ||| || | ||| | | ||| || || || ||
Sbjct 14251 GCTTGTTGGACCTCTCTGCTTCGGGTACGGGGTAGTA-GTTGAT----CTCAATGATCTT 14197
Query 145537 ATTCAAGTTTCGCACTACTACCTTTGT-AATGTGCCGCAACTTTTCAAAGTCAAACCGAG 145595
|||| ||| ||| | ||||| || | | | | || ||| | ||||||||| ||
Sbjct 14196 GTTCAGGTTCTTCACGATCACCTTGGTGACCGAGGC-CAGCTTCTTAAAGTCAAA---AG 14141
Query 145596 CCTCGTCAACGACCACACAGCTATTGACGGCGATCGACGCCAAATTACAAACTGCCGTCT 145655
| ||| || | | |||| |||||| || |||| ||||| || ||| ||
Sbjct 14140 TCCGCTCAGGCGTGACGTACATGTTGAGGGCGATGGAGGCCAGGTTACAGACCGCCACCT 14081
Query 145656 CCTCGGCGTCGCTGTATTGTAC-----GATCTCGGCGCACAAATTGCTACATTTGATGGT 145710
| || | | |||| | || ||| || ||||||||
Sbjct 14080 CGTCCTTGCTGGTGTACTCCACNNNNNNNNNNNNNNNNNNNNNNNGCTGCACTTGATGGT 14021
Query 145711 TCCCAGATTTTGCTGATTACTTTTCCTGTTGCACGCGTCCTTGTAGAGCATGTACGGTCC 145770
||||| || ||||| || || ||||| ||||| ||||| |||||||||||||| ||
Sbjct 14020 ACCCAGGTTCTGCTGGTTGCTCTTCCTATTGCAGGCGTCTTTGTAGAGCATGTAGGGCGT 13961
Query 145771 GCCAGTCTCCACCTGCGTCTCCACGATAAAACGGTGCAA--GTCCTGCGCACGCACCTGC 145828
|| || ||| ||| | ||| | ||| || ||| | ||| || |||| |
Sbjct 13960 CCCGGTTTCCGTCTGAGACTCGATGAT--GGCGTACCAAACCTGCTGAGCCTTCACCACC 13903
Query 145829 TGCTGGTAGCGGCCCTCTTCTTCGTATTTCCTGTAGAGCTCCTCAAACGCGGAACCGTAG 145888
| || | || || | ||| ||||| ||||||||| ||||||| | || ||
Sbjct 13902 TTCTTCACCCTCCCTTCCTTTTCATATTTAGTGTAGAGCTTCTCAAACTCCTCCCCCCAG 13843
Query 145889 CAATCGGACAGGCCGGGACACTTGTTGGGACACATCAG 145926
|| ||| ||| |||||||||| |||||||||||||||
Sbjct 13842 CACTCGTCCAGCCCGGGACACTCGTTGGGACACATCAG 13805
Score = 98.7 bits (108), Expect = 9e-16
Identities = 223/329 (68%), Gaps = 10/329 (3%)
Strand=Plus/Minus
Query 146221 CACGCCGAGACCGCCGCCGTACTTGGATATAGCGGCGCAGTCGCCGAGCGTCTCGTAGAT 146280
|||||||| ||||| || | ||||| || |||||| | || || ||||||||
Sbjct 13578 CACGCCGATCCCGCCAGCGGATTTGGAAATGAGGGCGCACTGCTTCAGGGTGTCGTAGAT 13519
Query 146281 GCCGTCAATGCTATCG--CTTCGAATGCCGAGCAGAAAGCACGAGCACATCTGCGCCATC 146338
||| || ||||| || |||| ||| ||||||| ||||| | ||| ||||| | |
Sbjct 13518 GCCCTCGATGCTGTCATCCTTC--ATGGCGAGCAGGAAGCAGCTGGACAGCTGCGGC--C 13463
Query 146339 GGC--GTCCCCGCCGAGAACAACGTCGGGCTCGCGTGCGTAAAC-ATTTTTCGGCTCATC 146395
|| ||||| || ||| | || || ||||| || ||| | || || | || |
Sbjct 13462 GGTTGGTCCCGGCGTTGAAGAGGGTTGGCGAGGCGTGGGTGAACCACTTCTCCGA-CAGC 13404
Query 146396 ATCCGATACGTTTCGATAGCGTCTTGAATGTCGTCGCCATGAATGCCCAAAGCGACGCGC 146455
| || || || || ||| | | |||||| || || || || || | | || | |
Sbjct 13403 AGGTTGTAGGTCTCAATGGCGGCATCAATGTCTTCTCCGTGGATACCGACCGACACCCTC 13344
Query 146456 ATGAGCATGTGTTGGGGCCGCTCCGCCACTTGATTGTCAATCTTTAACAAATAGCCGTTC 146515
||||||||||| || || ||||| ||||||| || ||||| | || |||| | |
Sbjct 13343 ATGAGCATGTGCTGCGGGCGCTCGGCCACTTTCCCGTTGATCTTCAGCAGATAGGAGCGC 13284
Query 146516 TCCAGGGTTTTGTATCCGAAAAATTTGTA 146544
|||||||||||| | || || || |||||
Sbjct 13283 TCCAGGGTTTTGAAGCCAAAGAAGTTGTA 13255
>seq8880
Length=69162
Score = 109 bits (120), Expect = 5e-19
Identities = 83/98 (85%), Gaps = 0/98 (0%)
Strand=Plus/Plus
Query 145670 TATTGTACGATCTCGGCGCACAAATTGCTACATTTGATGGTTCCCAGATTTTGCTGATTA 145729
|||| ||| || || | ||||| |||||| |||||||||| |||||||||||||| ||
Sbjct 10901 TATTCTACTATTTCTGTGCACAGATTGCTGGATTTGATGGTGCCCAGATTTTGCTGGTTG 10960
Query 145730 CTTTTCCTGTTGCACGCGTCCTTGTAGAGCATGTACGG 145767
| ||||||||||| |||||||||||||||||||| ||
Sbjct 10961 GTCTTCCTGTTGCAGGCGTCCTTGTAGAGCATGTAGGG 10998
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 471443340157440
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |