Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cyprinodon_20nevadensis_20pectoralis_20[genbank_20GCA_5F000776015.1_
202014-11-13] 96,516 sequences; 1,011,849,000 total letters
Query= NC_008168.1
Length=104710
Score E
Sequences producing significant alignments: (Bits) Value
seq5831 118 7e-22
seq92523 98.7 7e-16
>seq5831
Length=162632
Score = 118 bits (130), Expect = 7e-22
Identities = 128/170 (75%), Gaps = 0/170 (0%)
Strand=Plus/Minus
Query 6321 CCGACGAAATATTTCGGGTGCGAACTTGGCGCTCAGACGCAGTTTGATCACAAAAACGAG 6380
||||| || | ||| || || ||||| || |||||||| ||||||||| |||||||||
Sbjct 77498 CCGACCAAGTTTTTTGGTTGTGAACTCGGTGCTCAGACCCAGTTTGATACCAAAAACGAC 77439
Query 6381 CGCTTCATCGTTAACGGATCGCATAACTCTGCCAAGCTGCAGGACTTACTTGACGGCTTT 6440
|| | |||||| |||||||| ||| | | |||| ||||||| | ||||| || ||
Sbjct 77438 CGTTACATCGTCAACGGATCCCATGAGGCGAACAAGTTGCAGGATATGCTTGATGGGTTC 77379
Query 6441 ATTCGCAAGTTTGTGCTGTGTCGGGAATGCGATAACCCGGAGACCGAGCT 6490
|| | || ||||||||||||| || || || ||||| || || || ||
Sbjct 77378 ATCAGAAAATTTGTGCTGTGTCCCGAGTGTGACAACCCTGAAACTGACCT 77329
>seq92523
Length=1103
Score = 98.7 bits (108), Expect = 7e-16
Identities = 68/77 (88%), Gaps = 0/77 (0%)
Strand=Plus/Minus
Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006
|||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 653 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTTACGGTACTTGTCGACTATCGGTCTCGT 594
Query 20007 GGTAATATTTAGCCTTA 20023
| ||||||||||||
Sbjct 593 GCCGGTATTTAGCCTTA 577
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 334553205376796
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |