Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cyprinodon_20nevadensis_20pectoralis_20[genbank_20GCA_5F000776015.1_
202014-11-13] 96,516 sequences; 1,011,849,000 total letters
Query= NC_008291.1
Length=198050
Score E
Sequences producing significant alignments: (Bits) Value
seq4461 132 6e-26
seq4859 89.7 7e-13
seq8880 84.2 3e-11
>seq4461
Length=101207
Score = 132 bits (146), Expect = 6e-26
Identities = 297/446 (67%), Gaps = 0/446 (0%)
Strand=Plus/Minus
Query 63248 GCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCT 63307
||||||||||| ||||| | || ||| || | | |||||||| | || || || ||
Sbjct 13676 GCGGTGTTATTGTAAACCCGCAGCATCGGGACCAGCCCATTGGAGTTGCCGTTAGTGCCG 13617
Query 63308 GAGATATAGCTTCCACTGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATT 63367
| ||| ||||| ||| | | | || || | | | || || || || || |
Sbjct 13616 GCGATGTAGCTCCCAGTCGATCTGATGCAGCTCACCGCCACGCCGATCCCGCCAGCGGAT 13557
Query 63368 TTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATC 63427
|| || || | ||||| | || | || || ||||||||||| || || |||||| ||
Sbjct 13556 TTGGAAATGAGGGCGCACTGCTTCAGGGTGTCGTAGATGCCCTCGATGCTGTCATCCTTC 13497
Query 63428 ATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTA 63487
||| || || || ||||| |||| || | || | || || || || || | |||
Sbjct 13496 ATGGCGAGCAGGAAGCAGCTGGACAGCTGCGGCCGGTTGGTCCCGGCGTTGAAGAGGGTT 13437
Query 63488 GGAGAAGCGTGAGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCT 63547
|| || ||||| || ||||| || || || || || ||||| |||||||| || | ||
Sbjct 13436 GGCGAGGCGTGGGTGAACCACTTCTCCGACAGCAGGTTGTAGGTCTCAATGGCGGCATCA 13377
Query 63548 ATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACG 63607
|| || | || || || || | || | ||| | ||||||||| || | || |
Sbjct 13376 ATGTCTTCTCCGTGGATACCGACCGACACCCTCATGAGCATGTGCTGCGGGCGCTCGGCC 13317
Query 63608 ATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTG 63667
| || ||| || |||| || ||||| |||| ||||| || ||||| |||||
Sbjct 13316 ACTTTCCCGTTGATCTTCAGCAGATAGGAGCGCTCCAGGGTTTTGAAGCCAAAGAAGTTG 13257
Query 63668 TATGAAAAGTCTCGTTCGTAAATAAT 63693
|| ||||| |||| || ||||| ||
Sbjct 13256 TAGGAAAAATCTCTGTCATAAATGAT 13231
>seq4859
Length=382710
Score = 89.7 bits (98), Expect = 7e-13
Identities = 100/134 (75%), Gaps = 0/134 (0%)
Strand=Plus/Minus
Query 32685 TCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 32744
|| || || || || | ||| ||||| || || || |||||||||||||| | ||| ||
Sbjct 368934 TCATCCCTGCTGATGAGTTCATTGGAGAAGGTAAGGCCGGGCATTAGGCCTCTCTTCTTT 368875
Query 32745 AGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCA 32804
||||| | |||| |||||||| || || ||||| || || ||||| || ||||| ||
Sbjct 368874 AGCCAGTAGATGGCAGCAAATGAGCCTGAGAAGAAGATCCCCTCTACAGCTGCAAAAGCC 368815
Query 32805 ATAAGTCTCTCTCC 32818
| |||| ||| ||
Sbjct 368814 ACCAGTCGCTCCCC 368801
>seq8880
Length=69162
Score = 84.2 bits (92), Expect = 3e-11
Identities = 124/176 (70%), Gaps = 0/176 (0%)
Strand=Plus/Plus
Query 62459 GCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTATTT 62518
|| ||||||||||| ||||| | ||| |||| || ||||| |||||||| | | ||
Sbjct 9748 GCCAGTTCACAACTGGCCTCCAGGGCAGCGTAGTAGATGGTCTCGAAGATGTGAATGTTG 9807
Query 62519 AGATCTTGCGCTTCCAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTAAT 62578
|| || || ||| | || || ||||| || | ||| || || ||||| || |
Sbjct 9808 AGTAACTGGGCCTCCGGACTTTCGAATGGGTAGCGCATGAGGATGAAGGCGTCGGCCAGA 9867
Query 62579 CCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGG 62634
|| || |||||||| || || ||||| || | ||| || || ||||||| | |||
Sbjct 9868 CCCTGCACACCAATTCCTATTGGTCTGTGACGCTTGTTGGATTTTTCAGCCTGTGG 9923
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 632867554673600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |